New bounds and tractable instances for the transposition distance.

IEEE/ACM Trans Comput Biol Bioinform

Département de Mathématique, Université Libre de Bruxelles, Service de Géométrie, Combinatoire et Théorie des Groupes, Bruxelles, Belgium.

Published: January 2007

The problem of sorting by transpositions asks for a sequence of adjacent interval exchanges that sorts a permutation and is of the shortest possible length. The distance of the permutation is defined as the length of such a sequence. Despite the apparently intuitive nature of this problem, introduced in 1995 by Bafna and Pevzner, the complexity of both finding an optimal sequence and computing the distance remains open today. In this paper, we establish connections between two different graph representations of permutations, which allows us to compute the distance of a few non-trivial classes of permutations in linear time and space, bypassing the use of any graph structure. By showing that every permutation can be obtained from one of these classes, we prove a new tight upper bound on the transposition distance. Finally, we give improved bounds on some other families of permutations and prove formulas for computing the exact distance of other classes of permutations, again in polynomial time.

Download full-text PDF

Source
http://dx.doi.org/10.1109/TCBB.2006.56DOI Listing

Publication Analysis

Top Keywords

transposition distance
8
classes permutations
8
distance
6
bounds tractable
4
tractable instances
4
instances transposition
4
distance problem
4
problem sorting
4
sorting transpositions
4
transpositions asks
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!