Calcium indicators based on calmodulin-fluorescent protein fusions.

Methods Mol Biol

Institute of Biomaterials and Biomedical Engineering, Department of Electrical and Computer Engineering, University of Toronto, Ontario, Canada.

Published: December 2006

Calmodulin (CaM) is an ubiquitous protein involved in Ca2+-mediated signal transduction. On Ca2+ influx, CaM acquires a strong affinity to various cellular proteins with one or more CaM recognition sequences, resulting in the onset or termination of Ca2+-regulated cascades. Through nuclear magnetic resonance and crystallographic structural studies of these Ca2+-CaM complexes, we have gained a deep understanding of CaM target recognition mechanisms. One immediate application is the creation of protein-based Ca2+ sensors using CaM complexes and green fluorescent proteins, previously named "chameleon." The major advantage of chameleons is that they can be expressed in single cells and targeted to the specific organelles or tissues to measure localized Ca2+ changes. This chapter describes the methods involved in cloning chameleons, characterizing their biochemical and biophysical properties, and imaging them in single cells using a digital fluorescence microscope.

Download full-text PDF

Source
http://dx.doi.org/10.1385/1-59745-187-8:71DOI Listing

Publication Analysis

Top Keywords

single cells
8
cam
5
calcium indicators
4
indicators based
4
based calmodulin-fluorescent
4
calmodulin-fluorescent protein
4
protein fusions
4
fusions calmodulin
4
calmodulin cam
4
cam ubiquitous
4

Similar Publications

Cuproptosis, a newly identified form of cell death, has drawn increasing attention for its association with various cancers, though its specific role in colorectal cancer (CRC) remains unclear. In this study, transcriptomic and clinical data from CRC patients available in the TCGA database were analyzed to investigate the impact of cuproptosis. Differentially expressed genes linked to cuproptosis were identified using Weighted Gene Co-Expression Network Analysis (WGCNA).

View Article and Find Full Text PDF

Fibrolamellar Hepatocellular Carcinoma (FLC) is a rare liver cancer characterized by a fusion oncokinase of the genes DNAJB1 and PRKACA, the catalytic subunit of protein kinase A (PKA). A few FLC-like tumors have been reported showing other alterations involving PKA. To better understand FLC pathogenesis and the relationships among FLC, FLC-like, and other liver tumors, we performed a massive multi-omics analysis.

View Article and Find Full Text PDF

Micropapillary adenocarcinoma (MPC) is an aggressive histological subtype of lung adenocarcinoma (LUAD). MPC is composed of small clusters of cancer cells exhibiting inverted polarity. However, the mechanism underlying its formation is poorly understood.

View Article and Find Full Text PDF

The proximity ligation-based Hi-C and derivative methods are the mainstream tools to study genome-wide chromatin interactions. These methods often fragment the genome using enzymes functionally irrelevant to the interactions per se, restraining the efficiency in identifying structural features and the underlying regulatory elements. Here we present Footprint-C, which yields high-resolution chromatin contact maps built upon intact and genuine footprints protected by transcription factor (TF) binding.

View Article and Find Full Text PDF

Acute myeloid leukemia (AML) is an aggressive disease with a high relapse rate. In this study, we map the metabolic profile of CD34(CD38) AML cells and the extracellular vesicle signatures in circulation from AML patients at diagnosis. CD34 AML cells display high antioxidant glutathione levels and enhanced mitochondrial functionality, both associated with poor clinical outcomes.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!