The majority of existing human papillomavirus (HPV) genotyping assays are based on multiplex PCR using consensus or degenerate primers. We developed a Templex HPV assay that simultaneously detects and identifies 25 common HPV genotypes in a single-tube reaction using type-specific primers for the HPV-specific E6 and E7 genes. The analytical sensitivities of the Templex assay for HPV type 16 (HPV-16), -18, and -56 were 20, 100, and 20 copies per reaction mixture, respectively. The Templex assay provides semiquantitative information on each type when multiple HPV types coexist in one reaction. We tested 109 clinical cervical specimens previously evaluated with the Digene HC2 high-risk HPV DNA test and found 95.4% concordance between the assay results. The Templex assay provided type-specific results and found multiple types in 29.2% (14 of 48) of high-risk HPV-positive samples. The entire Templex procedure, including DNA extraction, can be completed within 5 hours, providing a rapid and reliable diagnostic tool for HPV detection and typing that is amenable to automation.
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http://dx.doi.org/10.1128/JCM.01762-06 | DOI Listing |
Sci Rep
July 2024
Geosciences Department and Laboratoire de Météorologie Dynamique (CNRS and IPSL), École Normale Supérieure and PSL University, Paris, France.
This study analyzes coupled atmosphere-ocean variability in the South Atlantic Ocean. To do so, we characterize the spatio-temporal variability of annual mean sea-surface temperature (SST) and sea-level pressure (SLP) using Multichannel Singular Spectrum Analysis (M-SSA). We applied M-SSA to ERA5 reanalysis data (1959-2022) of South Atlantic SST and SLP, both individually and jointly, and identified a nonlinear trend, as well as two climate oscillations.
View Article and Find Full Text PDFChaos
October 2023
Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, C1428EGA, Buenos Aires, Argentina.
Random attractors are the time-evolving pullback attractors of deterministically chaotic and stochastically perturbed dynamical systems. These attractors have a structure that changes in time and that has been characterized recently using Branched Manifold Analysis through Homologies cell complexes and their homology groups. This description has been further improved for their deterministic counterparts by endowing the cell complex with a directed graph (digraph), which encodes the order in which the cells in the complex are visited by the flow in phase space.
View Article and Find Full Text PDFChaos
August 2022
CNRS-IRD-CONICET-UBA, Institut Franco-Argentin d'Études sur le Climat et ses Impacts (IRL 3351 IFAECI), C1428EGA CABA, Argentina.
The theory of homologies introduces cell complexes to provide an algebraic description of spaces up to topological equivalence. Attractors in state space can be studied using Branched Manifold Analysis through Homologies: this strategy constructs a cell complex from a cloud of points in state space and uses homology groups to characterize its topology. The approach, however, does not consider the action of the flow on the cell complex.
View Article and Find Full Text PDFJ Microbiol Biotechnol
January 2016
State Key Laboratory of Genetic Engineering, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Science, Fudan University, Shanghai 200433, P.R. China.
The widespread occurrence of drug-resistant Mycobacterium tuberculosis places importance on the detection of TB (tuberculosis) drug susceptibility. Conventional drug susceptibility testing (DST) is a lengthy process. We developed a rapid enzymatic color-reaction-based biochip assay.
View Article and Find Full Text PDFJ Clin Microbiol
November 2006
Genaco Biomedical Products, Inc., Huntsville, Alabama 35805, USA.
The majority of existing human papillomavirus (HPV) genotyping assays are based on multiplex PCR using consensus or degenerate primers. We developed a Templex HPV assay that simultaneously detects and identifies 25 common HPV genotypes in a single-tube reaction using type-specific primers for the HPV-specific E6 and E7 genes. The analytical sensitivities of the Templex assay for HPV type 16 (HPV-16), -18, and -56 were 20, 100, and 20 copies per reaction mixture, respectively.
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