A mutant of Vibrio vulnificus that was more sensitive to low pH was screened from a library of mutants constructed by random transposon mutagenesis. By use of a transposon-tagging method, an open reading frame encoding a LysR homologue, AphB, was identified and cloned from V. vulnificus. The deduced amino acid sequence of AphB from V. vulnificus was 80% identical to that reported from V. cholerae. A mutational analysis demonstrated that the gene product of aphB contributes to acid tolerance of V. vulnificus. The lysine decarboxylase activity and cellular level of the cadA transcript were decreased in the aphB mutant, indicating that AphB exerts its effect on the acid tolerance of V. vulnificus by enhancing the expression of cadBA. Western blot analyses demonstrated that the cellular level of CadC, a transcription activator of the cadBA operon, was significantly reduced by aphB mutation, and a primer extension analysis revealed that the cadC promoter (P(cadC)) activity was under the positive control of AphB. A direct interaction between AphB and the P(cadC) DNA was demonstrated by gel mobility shift assays. The AphB binding site mapped by deletion analyses of the P(cadC) regulatory region and confirmed by a DNase I protection assay was centered at the 61.5 bp upstream of the transcription start site. Accordingly, these results demonstrate that AphB and CadC function sequentially in a regulatory cascade to activate cadBA expression and that AphB activates the expression of cadC by directly binding to an upstream region of P(cadC).
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http://dx.doi.org/10.1128/JB.00533-06 | DOI Listing |
Int J Biol Macromol
December 2024
International Center for the Scientific Development of Shrimp Aquaculture, National Cheng Kung University, Tainan 701, Taiwan, ROC; The PhD Program for Translational Medicine, College of Medical Science and Technology, Taipei Medical University and Academia Sinica, Taipei 115, Taiwan, ROC; Graduate Institute of Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, ROC. Electronic address:
Shrimp acute hepatopancreatic necrosis disease (AHPND) is one of the most devastating diseases to impact the global shrimp farming industry, with a mortality rate of 70 %-100 %. The key virulence factors are a pair of Photorhabdus insect-related (Pir)-like toxins, PirA and PirB. In this study, by using an in vitro transcription and translation assay, we first confirmed that the quorum sensing transcriptional regulator AphB could trigger the expression of its downstream genes after binding to the AphB binding sequence in the promoter region of the pirA/pirB operon.
View Article and Find Full Text PDFNucleic Acids Res
April 2024
College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China.
RNA helicases function as versatile enzymes primarily responsible for remodeling RNA secondary structures and organizing ribonucleoprotein complexes. In our study, we conducted a systematic analysis of the helicase-related activities of Escherichia coli HrpA and presented the structures of both its apo form and its complex bound with both conventional and non-canonical DNAs. Our findings reveal that HrpA exhibits NTP hydrolysis activity and binds to ssDNA and ssRNA in distinct sequence-dependent manners.
View Article and Find Full Text PDFAnal Chem
May 2023
Laboratory of Chemical Biology & Traditional Chinese Medicine Research, Ministry of Education, College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, P.R. China.
ATP, a small molecule with high intracellular concentration (mM level), provides a fuel to power signal amplification, which is meaningful for biosensing. However, traditional ATP-powered amplification is based on ATP/aptamer recognition, which is susceptible to the complex biological microenvironment (e.g.
View Article and Find Full Text PDFJ Bacteriol
April 2023
Faculty of Biology: Microbiology, Ludwig-Maximilians-Universität München, Martinsried, Germany.
Bacteria have evolved different systems to sense and adapt to acid stress. For example, Vibrio campbellii, a marine pathogen for invertebrates, encounters acidic conditions in the digestive glands of shrimp. The main acid resistance system of is the Cad system, which is activated when cells are in a low-pH, amino acid-rich environment.
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