The syntheses and X-ray structures of the complexes Ru(S-dmso)Cl2(opda) (1) and Ru(NH3)2Cl2(bqdi) (2) are described (opda= o-phenylenediamine, bqdi= o-benzoquinonediimine). Optical absorption and emission, vibrational (resonance Raman), and electrochemical data are discussed. We explore the nature of the ruthenium benzoquinone electronic interaction in species 2 primarily within the framework of density functional theory (DFT) but also using INDO/S to extract Coulombic and exchange integrals. The resonance Raman and emission data were understood in terms of a common set of coupled vibrations localized primarily within the ruthenium metallacycle ring. Experimental and computational data were also compared among a select group of ruthenium bqdi species with other spectator ligands, specifically ammonia, 2,2'-bipyridine, and 2,4-pentanedione. The changes in the electrochemistry, optical spectroscopy, and vibrational spectra with changing spectator ligand donicity were explained within a common theoretical (DFT) model which further provided a detailed analysis of the variation in the molecular orbital descriptions. With the application of an extended charge decomposition analysis (ECDA), a detailed picture emerged of the bonding between the bqdi ligand and the metal atom, illustrating the coupling between the orbitals of each fragment as a function of orbital symmetry and charge transfer between the fragments of the complex. Metal-to-bqdi pi-back-donation is seen to be very important.
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http://dx.doi.org/10.1021/ic060220z | DOI Listing |
J Inorg Biochem
December 2024
Departamento de Química Inorgánica, Analítica y Química Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires C1428EGA, Argentina; Instituto de Química Física de Los Materiales, Medio Ambiente y Energía (INQUIMAE), CONICET-Universidad de Buenos Aires, Buenos Aires C1428EGA, Argentina. Electronic address:
Here, we show that the replacement of the distal residues Asp and/or Arg of the DyP peroxidases from Bacillus subtilis and Pseudomonas putida results in functional enzymes, albeit with spectroscopically perturbed active sites. All the enzymes can be activated either by the addition of exogenous HO or by in situ electrochemical generation of the reactive oxygen species (ROS) OH, O and HO. The latter method leads to broader and upshifted pH-activity profiles.
View Article and Find Full Text PDFJ Phys Chem B
December 2024
Research Institute of Interdisciplinary Science & School of Materials Science and Engineering, Dongguan University of Technology, Dongguan 523808, China.
Peptide-based hydrogels form a kind of promising material broadly used in biomedicine and biotechnology. However, the correlation between their hydrogen bonding dynamics and mechanical properties remains uncertain. In this study, we found that the adoption of β-sheet and α-helix secondary structures by ECF-5 and GFF-5 peptides, respectively, could further form fiber networks to immobilize water molecules into hydrogels.
View Article and Find Full Text PDFNanomaterials (Basel)
December 2024
Guangdong Provincial Key Laboratory of Photonics Information Technology, Guangdong University of Technology, Guangzhou 510006, China.
The in situ and label-free detection of molecular information in biological cells has always been a challenging problem due to the weak Raman signal of biological molecules. The use of various resonance nanostructures has significantly advanced Surface-enhanced Raman spectroscopy (SERS) in signal enhancement in recent years. However, biological cells are often immersed in different formulations of culture medium with varying refractive indexes and are highly sensitive to the temperature of the microenvironment.
View Article and Find Full Text PDFJ Funct Biomater
December 2024
Cardiovascular Institute, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02115, USA.
Reactive oxygen species (ROS) are generated predominantly during cellular respiration and play a significant role in signaling within the cell and between cells. However, excessive accumulation of ROS can lead to cellular dysfunction, disease progression, and apoptosis that can lead to organ dysfunction. To overcome the short half-life of ROS and the relatively small amount produced, various imaging methods have been developed, using both endogenous and exogenous means to monitor ROS in disease settings.
View Article and Find Full Text PDFJ Chem Phys
December 2024
Department of Physics and Astronomy, Curtin University, Perth, Western Australia 6102, Australia.
Accurate Rayleigh and Raman scattering cross sections, tensor components, depolarization ratios, and reversal coefficients for all rovibrational transitions within the X1Σg+ ground electronic state of H2 have been calculated. Raman spectra have been generated using these data. A method for calculating Raman scattering cross sections is formulated that is valid below the ionization threshold and in the region containing resonances, which explicitly accounts for all bound and dissociative vibrational levels of the bound intermediate electronic states and approximately accounts for the ionization continuum.
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