3-Benzyl-1,5-hexadiyne (BHD) was studied by a combination of methods, including resonance-enhanced-two-photon ionization, UV-UV hole-burning spectroscopy, resonant ion-dip infrared spectroscopy, and rotational band contour analysis. There are five conformations of BHD observed in the expansion with their 1<-- S0 origins occurring at 37520, 37565, 37599, 37605, and 37631 cm(-1). DFT calculations predict six low energy conformations. Conformational assignments have been made by comparison of the experimental infrared spectra in the alkyl and acetylenic CH stretch region to DFT vibrational frequency and infrared intensity calculations. Rotational band contours provided further confirmation of these assignments. The electronic origin shifts of BHD compare favorably to the electronic origin shifts of 5-phenyl-1-pentyne with the exception of one conformation. This conformation is unique in that it is the only structure with both acetylenic groups in the gauche position over the ring. This gauche-gauche conformation exhibits a perpendicular (b-type) transition and produces extensive vibronic coupling reminiscent of symmetric monosubstituted benzenes.
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Int J Mol Sci
November 2024
Department of Physics, Faculty of Natural Sciences, Norwegian University of Science and Technology (NTNU), Gløshaugen, Realfagbygget, NO-7491 Trondheim, Norway.
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View Article and Find Full Text PDFJ Am Soc Mass Spectrom
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Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, United Kingdom.
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View Article and Find Full Text PDFChem Commun (Camb)
November 2024
Bioorganic Chemistry Laboratory, New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research (JNCASR), Jakkur, P.O., Bengaluru, 560064 Karnataka, India.
Identifying distinct noncanonical structures in pathogenic genomes is crucial for developing new diagnostic tools. This study uncovers stable G-quadruplex (GQ) structures in conserved DNA sequences unique to the monkeypox virus (MPV). Furthermore, we developed a method for the detection of target GQ using a fluorogenic probe.
View Article and Find Full Text PDFJ Phys Chem A
December 2023
Department of Chemistry, The College of William & Mary, Williamsburg, Virginia 23187-8795, United States.
The molecular chromophores within brown carbon (BrC) aerosols absorb solar radiation at visible and near-ultraviolet wavelengths. This contributes to the overall warming of the troposphere and the photochemical aging of aerosols. In this investigation, we combine a suite of experimental and theoretical methods to reveal the conformation-specific ultraviolet and infrared spectroscopy of 2-phenylpyrrole (2PhPy)─an extended π-conjugated pyrrole derivative and a model BrC chromophore─along with its water microsolvated molecular complexes (2PhPy:HO, = 1-3).
View Article and Find Full Text PDFJ Phys Chem A
August 2023
Gas Phase Chemical Physics, Sandia National Laboratories, Livermore, California 94550, United States.
UV photofragment spectroscopy and IR-UV double resonance methods are used to determine the structure and spectroscopic responses of a three-dimensional [2.2.2]-benzocryptand cage to the incorporation of a single K or Ba imbedded inside it (labeled as K-BzCrypt, Ba-BzCrypt).
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