A series of N4-hydroxycytosines, unsubstituted or substituted with methyl groups at N3 or C5 atoms of the heterocyclic ring, was studied using the matrix-isolation method. Depending on the absence or presence of the methyl substituent at N3 or C5 atoms (or at both of them) the syn or anti form of the compounds (or a mixture of both forms) was trapped from the gas phase into a low-temperature matrix. Upon UV (lambda > 295 nm) irradiation of the matrixes the syn --> anti as well as the anti --> syn photoisomerization reactions were observed. The syn and anti isomers of N4-hydroxycytosines were identified by comparing their experimental IR spectra with the theoretical spectra calculated at the DFT(B3LYP)/6-31G(d,p) level. For the majority of the studied compounds, the UV induced reactions led to a photostationary state. The position of the final photostationary state was found to be a sensitive function of weak interactions of a studied N4-hydroxycytosine with the matrix environment: solid argon or solid nitrogen. However, not all of the studied photoisomerizations led to a classical photostationary state. For some of the investigated N4-hydroxycytosines, the position of the photostationary state was shifted very strongly in favor of the photoproduct, whereas for some others the position was shifted so strongly in favor of the starting isomer that no photoisomerization was observed. These experimental findings were elucidated by theoretical investigations of the potential energy surfaces of the ground (S0) and first excited (S1) electronic states of N4-hydroxycytosine. The crucial result of these calculations (carried out at the CASSCF level) was the localization of a conical intersection between S0 and S1 at a structure with perpendicular orientation of the hydroxylimino group with respect to the heterocyclic ring.
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http://dx.doi.org/10.1021/jp057186e | DOI Listing |
Chem Sci
November 2024
LCM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris Route de Saclay 91120 Palaiseau France
The cyclononatetraenyl (Cnt) ligand is a large monoanionic ligand. It is easily synthesized by ring expansion after cyclopropanation of the cyclooctatetraenyl (Cot) ligand. The Cnt ligand can be reported as the --- () isomer, where the aromatic ring is flat, and all carbon atoms form a homogenous ring, and as the --- () isomer, where one carbon places itself inside the ring.
View Article and Find Full Text PDFJ Am Chem Soc
November 2024
Department of Chemistry, Molecular Sciences Research Hub, Imperial College London, 82 Wood Lane, London W12 0BZ, U.K.
The incorporation of photoresponsive groups into porous materials is attractive as it offers potential advantages in controlling the pore size and selectivity to guest molecules. A combination of computational modeling and experiment resulted in the synthesis of two azobenzene-derived organic cages based on building blocks identified in a computational screen. Both cages incorporate three azobenzene moieties, and are therefore capable of 3-fold isomerization, using either ditopic or tetratopic aldehydes containing diazene functionality.
View Article and Find Full Text PDFChemistry
December 2024
Centre for Systems Chemistry, Stratingh Institute, University of Groningen, Nijenborgh 3, Groningen, 9747 AG, The Netherlands.
Due to thermal E/Z isomerization, hydrazones in solution typically exist in thermodynamic equilibria between their isomers. Irradiation of such solutions leads to photostationary states that may differ from the equilibrium distribution. Operating such switchable hydrazones in a biphasic system of two immiscible solvents introduces three new degrees of freedom: the E/Z equilibrium in the second solvent and two equilibria for distribution of each of the isomers between the solvents.
View Article and Find Full Text PDFJ Org Chem
October 2024
Department of Chemistry, University of Florida, PO Box 117200, Gainesville, Florida 32611, United States.
A series of oligothiophenes singly and doubly functionalized with dicyanorhodanine (RCN) units have been investigated to understand their / photoisomerization behavior upon structural modulation. Monotopic RCN target molecules (-) were designed to observe the consequences of π-conjugation, solubilizing group substitution, and formylation of the thiophene units. In all cases, the isomer is obtained from synthesis as the thermodynamically stable isomer, whereas the isomer is achieved through selective irradiation (including red light, λ = 628 nm) as a / mixture in solution.
View Article and Find Full Text PDFChem Commun (Camb)
October 2024
Institut für Organische Chemie, Universitat Würzburg, 97074 Würzburg, Germany.
We recently demonstrated that suitably functionalised aryliminopyrazoles can exhibit useful photoswitching properties. This study investigates the photoswitching potential of iminobispyrazoles (IBPs). We find that the regiochemistry of the IBPs strongly dictates their photoswitching properties, most notably, the , the photostationary state, and the thermal half-life of the -isomer.
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