Mayday--a microarray data analysis workbench.

Bioinformatics

Center for Bioinformatics Tübingen, Department of Information and Cognitive Sciences, University of Tübingen, Sand 14, 72076 Tübingen, Germany.

Published: April 2006

Unlabelled: Mayday is a workbench for visualization, analysis and storage of microarray data. It features a graphical user interface and supports the development and integration of existing and new analysis methods. Besides the infrastructural core functionality, Mayday offers a variety of plug-ins, such as various interactive viewers, a connection to the R statistical environment, a connection to SQL-based databases and different data mining methods, including WEKA-library based methods for classification and various clustering methods. In addition, so-called meta information objects are provided for annotation of the microarray data allowing integration of data from different sources, which is a feature that, for instance, is employed in the enhanced heatmap visualization.

Supplementary Information: The software and more detailed information including screenshots and a user guide as well as test data can be found on the Mayday home page http://www.zbit.uni-tuebingen.de/pas/mayday. The core is published under the GPL (GNU Public License) and the associated plug-ins under the LGPL (Lesser GNU Public License).

Download full-text PDF

Source
http://dx.doi.org/10.1093/bioinformatics/btl070DOI Listing

Publication Analysis

Top Keywords

microarray data
12
gnu public
8
public license
8
data
6
mayday--a microarray
4
data analysis
4
analysis workbench
4
workbench unlabelled
4
unlabelled mayday
4
mayday workbench
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!