The inverse temperature transition (ITT) of a biomimetic model for elastin, capped GVG(VPGVG) in liquid water, is investigated by a comprehensive classical molecular dynamics study. The temperature dependence of the solvation structure and dynamics of the octapeptide are compared using three common force fields, CHARMM, GROMOS, and OPLS. While these force fields differ in quantitative detail, they all predict this octapeptide to undergo a "folding transition" to closed conformations upon heating and a subsequent "unfolding transition" to open conformations at still higher temperatures, thus reproducing the ITT scenario. The peptide kinetics is analyzed within the reactive flux formalism applied to the largest-amplitude mode extracted from principal component analysis, and the solvent's dielectric fluctuations are obtained from the total water dipole autocorrelations. Most importantly, preliminary evidence for an intimate coupling of peptide folding/unfolding dynamics, and thus the ITT, and dielectric relaxation of bulk water is given, possibly being consistent with a "slave mode" picture.

Download full-text PDF

Source
http://dx.doi.org/10.1021/jp054805aDOI Listing

Publication Analysis

Top Keywords

inverse temperature
8
temperature transition
8
reactive flux
8
dielectric relaxation
8
force fields
8
transition biomimetic
4
biomimetic elastin
4
elastin model
4
model reactive
4
flux analysis
4

Similar Publications

In Vivo Tissue Temperature Characteristics of Contact Force Catheter With a Mesh-Shaped Irrigation Tip: A Porcine Study.

Pacing Clin Electrophysiol

January 2025

Section of Laboratory for Animal Experiments, Institute of Medical Science, Medical Research Support Center, Nihon University, School of Medicine, Tokyo, Japan.

Background: Neither the actual in vivo tissue temperatures reached with a novel contact force sensing catheter with a mesh-shaped irrigation tip (TactiFlex SE, Abbott) nor the safety profile has been elucidated.

Methods: In a porcine model (n = 8), thermocouples were implanted epicardially in the superior vena cava, right pulmonary vein, and esophagus close to the inferior vena cava following a right thoracotomy. After chest closure, endocardial ablation was conducted near the thermocouples under fluoroscopic guidance.

View Article and Find Full Text PDF

The discovery of high-temperature superconductivity in LaNiO under pressure has drawn great attention. However, consensus has not been reached on its pairing symmetry in theory. By combining density-functional-theory (DFT), maximally-localized-Wannier-function, and linearized gap equation with random-phase-approximation, we find that the pairing symmetry of LaNiO is d, if its DFT band structure is accurately reproduced by a downfolded bilayer two-orbital model.

View Article and Find Full Text PDF

Poly-N-isopropylacrylamide (PNIPAm), a thermorresponsive polymer, highly soluble in water below its lower critical solution temperature (LCST), is widely used in biomedical applications like drug delivery. Being able to measure PNIPAm size and aggregation state in solution quickly, inexpensively, and accurately below the LCST is critical when stoichiometric particle or molecular ratios are required. Dynamic light scattering (DLS) is probably the most widely available, and inexpensive nanoparticle sizing technique, but there are limitations with respect to sample polydispersity.

View Article and Find Full Text PDF

This paper presents a comprehensive numerical investigation to simulate heat transfer and residual stress formation of Ti-6Al-4V alloy during the Laser Powder Bed Fusion process, using a finite element model (FEM). The FEM was developed with a focus on the effects of key process parameters, including laser scanning velocity, laser power, hatch space, and scanning pattern in single-layer scanning. The model was validated against experimental data, demonstrating good agreement in terms of temperature profiles and melt pool dimensions.

View Article and Find Full Text PDF

Manganese-based alloys with the composition MnFeZ (Z = Si, Al) have been extensively investigated in recent years due to their potential applications in spintronics. The MnFeSi alloy, prepared in the form of ingots, powders, or ribbons, exhibits either a cubic full-Heusler (2) structure, an inverse-Heusler (XA) structure, or a combination of both. In contrast, the MnFeAl alloy has so far been synthesized only in the form of ingots, featuring a primitive cubic (β-Mn type) structure.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!