A distinctive signature of living systems is Darwinian evolution, that is, a propensity to generate as well as self-select individual diversity. To capture this essential feature of life while describing the dynamics of populations, mathematical models must be rooted in the microscopic, stochastic description of discrete individuals characterized by one or several adaptive traits and interacting with each other. The simplest models assume asexual reproduction and haploid genetics: an offspring usually inherits the trait values of her progenitor, except when a mutation causes the offspring to take a mutation step to new trait values; selection follows from ecological interactions among individuals. Here we present a rigorous construction of the microscopic population process that captures the probabilistic dynamics over continuous time of birth, mutation, and death, as influenced by the trait values of each individual, and interactions between individuals. A by-product of this formal construction is a general algorithm for efficient numerical simulation of the individual-level model. Once the microscopic process is in place, we derive different macroscopic models of adaptive evolution. These models differ in the renormalization they assume, i.e. in the limits taken, in specific orders, on population size, mutation rate, mutation step, while rescaling time accordingly. The macroscopic models also differ in their mathematical nature: deterministic, in the form of ordinary, integro-, or partial differential equations, or probabilistic, like stochastic partial differential equations or superprocesses. These models include extensions of Kimura's equation (and of its approximation for small mutation effects) to frequency- and density-dependent selection. A novel class of macroscopic models obtains when assuming that individual birth and death occur on a short timescale compared with the timescale of typical population growth. On a timescale of very rare mutations, we establish rigorously the models of "trait substitution sequences" and their approximation known as the "canonical equation of adaptive dynamics". We extend these models to account for mutation bias and random drift between multiple evolutionary attractors. The renormalization approach used in this study also opens promising avenues to study and predict patterns of life-history allometries, thereby bridging individual physiology, genetic variation, and ecological interactions in a common evolutionary framework.
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http://dx.doi.org/10.1016/j.tpb.2005.10.004 | DOI Listing |
EJNMMI Res
March 2025
Department of Nuclear Medicine, University Hospital Würzburg, Würzburg, Germany.
Background: The aim of this study is to evaluate the induction of DNA damage by 45 radionuclides, including those used in medical applications and others relevant to radiation protection. The research focuses on understanding the differential effects of irradiating lymphocytes with beta/gamma- and alpha-emitting radionuclides using Monte Carlo simulations. A validated Monte Carlo simulation model was used to assess radiation-induced DNA damage in lymphocytes.
View Article and Find Full Text PDFTransl Stroke Res
March 2025
Department of Acupuncture and Moxibustion, The Second Affiliated Hospital of Nanjing University of Chinese Medicine/Jiangsu Second Chinese Medicine Hospital, Nanjing, 210017, Jiangsu, China.
Ischemic stroke (IS) commonly results in long-term disability, largely due to alterations in neuronal networks. In repeatable rodent IS model under naturalistic conditions, the difficulty of capturing single-cell neuronal activities and how this solves a long-standing challenge is still remained. Here, we combined a photothrombotic stroke model with head-mounted miniaturized two-photon microscopy (mTPM) to achieve longitudinal, real-time imaging of GABAergic neurons in the contralesional primary motor cortex (M1) in freely moving mice.
View Article and Find Full Text PDFJ Chem Phys
March 2025
Freie Universität Berlin, Fachbereich Mathematik und Informatik, Arnimallee 6, 14195 Berlin, Germany.
Non-equilibrium molecular dynamics (NEMD) simulations of fluid flow have highlighted the peculiarities of nanoscale flows compared to classical fluid mechanics; in particular, boundary conditions can deviate from the no-slip behavior at macroscopic scales. For fluid flow in slit-shaped nanopores, we demonstrate that surface morphology provides an efficient control on the slip length, which approaches zero when matching the molecular structures of the pore wall and the fluid. Using boundary-driven, energy-conserving NEMD simulations with a pump-like driving mechanism, we examine two types of pore walls-mimicking a crystalline and an amorphous material-that exhibit markedly different surface resistances to flow.
View Article and Find Full Text PDFVet Med Sci
March 2025
Orthopedics and Traumatology Department, Duzce University Medical Faculty, Duzce, Turkey.
Background: Wound healing is one of the most interesting topics in orthopaedic surgery, and there are many studies on the factors and mechanisms affecting this process.
Objectives: To evaluated the macroscopic and histopathological results of drone larvae homogenate (DLH) on wound healing in a full-thickness wound model.
Methods: Thirty male wistar rats (6-8 weeks, 250 ± 50 g) were used.
ACS Omega
March 2025
Department of Biomedical Engineering, National Cheng Kung University, Tainan 70101, Taiwan.
Cartilage tissue has a limited intrinsic capacity for self-healing. Over the decades, researchers have extensively researched methods of cartilage repair, yet some limitations still need to be resolved. Most studies typically evaluate osteochondral regeneration in normal animals.
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