Femtochemistry of orange II in solution and in chemical and biological nanocavities.

Proc Natl Acad Sci U S A

Departamento de Química Física, Sección de Químicas, Facultad de Ciencias del Medio Ambiente, Universidad de Castilla-La Mancha, Avenida Carlos III, S.N., 45071 Toledo, Spain.

Published: December 2005

AI Article Synopsis

  • The study investigated how cyclodextrins and human serum albumin bind to the dye orange II, focusing on the dynamics of proton transfer and isomerization reactions using femtosecond time resolution.
  • Researchers found that the confined environment affects the dynamics, leading to varying emission lifetimes and indicating that the binding structure of the protein-ligand complex is somewhat flexible, rather than completely rigid.
  • The fast isomerization and decay processes were linked to specific molecular vibrations, and the study emphasized how confinement within molecular cavities influences these reactions and their related emission properties.

Article Abstract

In this work, we report on studies of the nature of the dynamics and hydrophobic binding in cyclodextrins and human serum albumin protein complexes with orange II. With femtosecond time resolution, we examined the proton-transfer and trans-cis isomerization reactions of the ligand in these nanocavities and in pure solvents. Because of confinement at the ground state, the orientational motion in the formed phototautomer is restricted, leading to a rich dynamics. Therefore, the emission lifetimes span a large window of tens to hundreds of picoseconds in the cavities. Possible H-bond interactions between the guest and cyclodextrin do not affect the caged dynamics. For the protein-ligand complexes, slow diffusional motion ( approximately 630 ps) observed in the anisotropy decay indicates that the binding structure is not completely rigid, and the embedded guest is not frozen with the hydrophobic pocket. The ultrafast isomerization and decays are explained in terms of coupling motions between N-N and C-N stretching modes of the formed tautomer. We discuss the role of confinement on the trans-cis isomerization with the cavities and its relationships to frequency and time domains of nanostructure emission.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1345726PMC
http://dx.doi.org/10.1073/pnas.0507459102DOI Listing

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