The light-induced degradation of alkylurea derivatives under simulated solar irradiation has been investigated in aqueous solutions containing TiO(2) as a photocatalyst. Herein, we will focus on how the presence of one or more methyl (or ethyl) groups on urea modifies the kinetics of disappearance and influences both the ratio and the extent of the inorganic nitrogen formation caused by different degradation pathways. In the present work, we have elucidated a mechanism for the formation of transformation products of the alkyl derivatives by combining several analytical and spectroscopic procedures and the theoretical simulation of ab initio calculations. In all cases, N-demethylation represents only a secondary pathway, while the main transformation proceeds through an unexpected cyclization, involving (m)ethyl- and di(m)ethylureas with the formation of (methyl)amino-2,3-dihydro-1,2,4-oxadiazol-3-one as the principal intermediate of the reaction (with a yield of 60 %). This behaviour is rather unexpected and in contrast with the typical photocatalyzed transformation pathways, which proceed through the formation of more simple structures.
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http://dx.doi.org/10.1002/chem.200500292 | DOI Listing |
Chembiochem
December 2024
Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333 CC, Leiden The, Netherlands.
Ligands for Toll-like-receptor 2 (TLR2) have demonstrated significant potential as immune-stimulating components in synthetic vaccines. Activation of TLR2 relies on the formation of dimeric complexes with either TLR1 or TLR6 and the nature of these dimers can impact therapeutic outcomes. The lipopeptide-based TLR2 ligands PamCysSK and PamCysSK have been extensively studied, and their recognition by different TLR-receptor heterodimers, TLR2/TLR1 and TLR2/TLR6, respectively, has been established.
View Article and Find Full Text PDFJ Agric Food Chem
July 2020
Department of Inorganic and Organic Chemistry, ESTCE, Universitat Jaume I, Avda. Sos Baynat, s/n, 12071, Castellón, Spain.
Low-molecular-weight compounds containing alkylurea fragments attached to the amino end of different miminalistic pseudopeptidic structures have been shown to be excellent organogelators in a variety of organic solvents and liquid organic compounds of different nature. The formation of gels in this work is defined through rheological measurements for those cases where ' > ''. Both the topology and the symmetry of the corresponding urea compounds play a role in defining their organogelator behavior.
View Article and Find Full Text PDFAlkylureas display hydrocarbon and amide groups, the primary functional groups of proteins. To obtain the thermodynamic information that is needed to analyze interactions of amides and proteins with nucleobases and nucleic acids, we quantify preferential interactions of alkylureas with nucleobases differing in the amount and composition of water-accessible surface area (ASA) by solubility assays. Using an established additive ASA-based analysis, we interpret these thermodynamic results to determine interactions of each alkylurea with five types of nucleobase unified atoms (carbonyl spO, amino spN, ring spN, methyl spC, and ring spC).
View Article and Find Full Text PDFJ Chem Phys
January 2018
Drittes Physikalisches Institut, Georg-August-Universität Göttingen, Friedrich-Hund-Platz 1, 37077 Göttingen, Germany.
Compressibility data and broadband dielectric spectra of aqueous solutions of urea and some of its alkylated derivatives have been evaluated to yield their numbers N of hydration water molecules per molecule of solute. N values in a broad range of solute concentrations are discussed and are compared to hydration numbers of other relevant molecules and organic ions. Consistent with previous results, it is found that urea differs from other solutes in its unusually small hydration number, corresponding to just one third of the estimated number of nearest neighbor molecules.
View Article and Find Full Text PDFJ Chem Phys
June 2017
Division of Chemical Engineering, Graduate School of Engineering Science, Osaka University, Toyonaka, Osaka 560-8531, Japan.
The effects of urea and its alkylated derivatives on the structure of T4-lysozyme were analyzed from the standpoint of energetics. Molecular dynamics simulations were conducted with explicit solvent, and the energy-representation method was employed to compute the free energy of transfer of the protein from pure-water solvent to the mixed solvents of water with urea, methylurea, 1,1-dimethylurea, and isopropylurea. Through the decomposition of the transfer free energy into the cosolvent and water contributions, it was observed that the former is partially cancelled by the latter and governs the total free energy of transfer.
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