Establishing a reliable genotyping protocol is a critical matter in post-sequence genetics. In this article, we describe a highly sensitive electrochemical detection of complementary DNAs (up to 43-mer) based on hole transport with molecular-scale, "wire-like" DNA probes. The presence of a single-base mismatch in the DNA duplexes caused a dramatic decrease in the electrochemical response. We applied this method to detect all of the possible transition and transversion SNPs and achieved "on-off"-type discrimination of fully complementary DNAs from their SNPs. Furthermore, naturally occurring polymorphisms, "hot spots" from the p53 gene, could clearly be distinguished from wild type by using our methodology.
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http://dx.doi.org/10.1073/pnas.0502078102 | DOI Listing |
Nat Commun
May 2018
Division of Physics and Applied Physics, School of Physical and Mathematical Sciences, Nanyang Technological University, Singapore, 637371, Singapore.
We investigate the self-assembly of short pieces of the Tetrahymena telomeric DNA sequence d[GTG] in physiologically relevant aqueous solution using atomic force microscopy (AFM). Wire-like structures (G-wires) of 3.0 nm height with well-defined surface periodic features were observed.
View Article and Find Full Text PDFNat Commun
September 2017
Chemical Nanoscience Labs, School of Chemistry, Newcastle University, Newcastle upon Tyne, NE1 7RU, UK.
Advances in bottom-up material design have been significantly progressed through DNA-based approaches. However, the routine integration of semiconducting properties, particularly long-range electrical conduction, into the basic topological motif of DNA remains challenging. Here, we demonstrate this with a coordination polymer derived from 6-thioguanosine (6-TG-H), a sulfur-containing analog of a natural nucleoside.
View Article and Find Full Text PDFDalton Trans
July 2017
Department of Materials Science and Engineering, Texas A&M University, College Station, Texas TX-77843, USA. and Department of Mechanical Engineering, Texas A&M University, College Station, Texas TX-77843, USA.
Palladium nanoparticles (Pd NPs) of three different morphologies viz., nanocubes with cetyltrimethylammonium bromide (CTAB), nanowires with polyvinyl alcohol (PVA) and Pd NPs with deoxyribonucleic acid (DNA) scaffolds were synthesized by UV-irradiation. Catalysis and surface enhanced Raman scattering (SERS) studies were done with the synthesized morphologically distinct Pd nanostructures for the very first time.
View Article and Find Full Text PDFPhys Chem Chem Phys
February 2015
Electrochemical Materials Science (ECMS) Division, CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi-630006, Tamil Nadu, India.
A DNA-encapsulated chain and wire-like β-MnO2 organosols have been synthesized utilizing a two-phase water-toluene extraction procedure at room temperature (RT). The β-MnO2 organosol was prepared by transferring KMnO4 and DNA from aqueous solution separately to an organic solvent (toluene) using a phase transfer catalyst, mixing both organic solutions together, and subsequent reduction with NaBH4. The eventual diameters of the MnO2 particles in chain-like and wire-like morphologies were ∼1-2 nm and ∼1.
View Article and Find Full Text PDFPhys Chem Chem Phys
October 2014
Electrochemical Materials Science (ECMS) Division, CSIR-Central Electrochemical Research Institute (CECRI), Karaikudi-630006, Tamil Nadu, India.
A new approach is developed for the aqueous phase formation of flake-like and wire-like β-MnO2 nanomaterials on a DNA scaffold at room temperature (RT) within a shorter time scale. The β-MnO2 nanomaterials having a band gap energy ∼3.54 eV are synthesized by the reaction of Mn(II) salt with NaOH in the presence of DNA under continuous stirring.
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