We present a partially automated method for the thermodynamic treatment of large-amplitude motions. Starting from the molecular geometry and the Hessian matrix, we evaluate anharmonic partition functions for selected vibrational degrees of freedom. Supported anharmonic vibration types are internal rotation and inversion (oscillation in a double-well potential). By heuristic algorithms, we identify internal rotations in most cases automatically from the Hessian eigenvectors, and we also estimate the parameters of anharmonic partition functions (e.g., potential barrier, periodicity, and symmetry number) with thermodynamically sufficient precision. We demonstrate the validity of our schemes by comparison to pointwise calculated ab initio potential curves.
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http://dx.doi.org/10.1002/jcc.20280 | DOI Listing |
BMC Plant Biol
January 2025
Department of Field Crops, Faculty of Agriculture, Necmettin Erbakan University, Konya, 42310, Türkiye.
Background: Innovation in crop establishment is crucial for wheat productivity in drought-prone climates. Seedling establishment, the first stage of crop productivity, relies heavily on root and coleoptile system architecture for effective soil water and nutrient acquisition, particularly in regions practicing deep planting. Root phenotyping methods that quickly determine coleoptile lengths are vital for breeding studies.
View Article and Find Full Text PDFJ Mol Model
January 2025
Processes, Materials and Environment Laboratory (LPME), Faculty of Sciences and Technology of Fez, Sidi Mohamed Ben Abdellah University, B.P. 2202, Fez, Morocco.
Context: Natural fluorapatite (FAP) has been investigated as an adsorbent for the removal of dyes such as methylene blue (MB) and crystal violet (CV) from aqueous solutions. Effective dye removal is crucial for water treatment, particularly for industrial wastewater containing toxic dyes. FAP, a naturally abundant material, was characterized using XRD, FTIR, and SEM analysis.
View Article and Find Full Text PDFPharmaceutics
January 2025
Division of Pharmaceutical Sciences, James L Winkle College of Pharmacy, University of Cincinnati, Cincinnati, OH 45267, USA.
RNA nanoparticles, derived from the packaging RNA three-way junction motif (pRNA-3WJ) of the bacteriophage phi29 DNA packaging motor, have been demonstrated to be thermodynamically and chemically stable, with promise as a nanodelivery system. : A previous study showed that RNA nanoparticles with antiangiogenic aptamers (anti-vascular endothelial growth factor (VEGF) and anti-angiopoietin-2 (Ang2) aptamers) inhibited cell proliferation via WST-1 assay. To further investigate the antiangiogenic potential of these RNA nanoparticles, a modified three-dimensional (3D) spheroid sprouting assay model of human umbilical vein endothelial cells was utilized in the present study.
View Article and Find Full Text PDFPharmaceuticals (Basel)
January 2025
Medical Genomics Research Department, King Abdullah International Medical Research Center (KAIMRC), Ministry of National Guard Health Affairs (MNGH), Riyadh 11481, Saudi Arabia.
Breast cancer remains a significant global health concern, with approximately 2.3 million diagnosed cases and 670,000 deaths annually. Current targeted therapies face challenges such as resistance and adverse side effects.
View Article and Find Full Text PDFSensors (Basel)
January 2025
Department of Sports Science and Sports Development, Faculty of Allied Health Sciences, Thammasat University, Pathumthani 12120, Thailand.
This research has developed a heat stroke warning system prototype for athletes utilizing the following sensors: DHT22, GY-906-BAA MLX90614, MAX30102. The device calculates the heat stroke risk and notifies users. The data is recorded, stored, displayed on a free-access website which graphs body temperature, ambient temperature, humidity, heart rate and heat stroke risk, and provides notifications for athletes engaged in outdoor activities.
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