Ligand migration and protein fluctuations in myoglobin mutant L29W.

Biochemistry

Department of Biophysics, University of Ulm, Albert-Einstein-Allee 11, 89081 Ulm, Germany.

Published: April 2005

We have determined eight X-ray structures of myoglobin mutant L29W at various experimental conditions. In addition, infrared spectroscopic experiments are presented, which are discussed in the light of the X-ray structures. Two distinct conformations of the CO-ligated protein were identified, giving rise to two stretching bands of heme-bound CO. If L29W MbCO crystals are illuminated around 180 K, a deoxy species is formed. The CO molecules migrate to the proximal side of the heme and remain trapped in the so-called Xe1 cavity upon temperature decrease to 105 K. The structure of this photoproduct is almost identical to the equilibrium high-temperature deoxy Mb structure. If the temperature is cycled to increasingly higher values, CO recombination is observed. Three intermediate structures have been determined during the rebinding process. Efficient recombination occurs only above 180 K, the characteristic temperature for the onset of protein dynamics. Rebinding is remarkably slow because bulky residues His64 and Trp29 block important migration pathways of the CO molecule.

Download full-text PDF

Source
http://dx.doi.org/10.1021/bi047513tDOI Listing

Publication Analysis

Top Keywords

myoglobin mutant
8
mutant l29w
8
x-ray structures
8
ligand migration
4
migration protein
4
protein fluctuations
4
fluctuations myoglobin
4
l29w determined
4
determined x-ray
4
structures myoglobin
4

Similar Publications

Nitrite (NO) interacts with myoglobin (Mb) and hemoglobin (Hb) behaving as a ligand of both the ferrous (i.e., Mb(II) and Hb(II)) and ferric (i.

View Article and Find Full Text PDF

The remarkable efficiency with which enzymes catalyze small-molecule reactions has driven their widespread application in organic chemistry. Here, we employ automated fast-flow solid-phase synthesis to access catalytically active full-length enzymes without restrictions on the number and structure of noncanonical amino acids incorporated. We demonstrate the total syntheses of iron-dependent myoglobin (BsMb) and sperm whale myoglobin (SwMb).

View Article and Find Full Text PDF

The mechanism of autoreduction in Dehaloperoxidase-A.

Biochem Biophys Res Commun

January 2025

Department of Chemistry, North Carolina State University, Raleigh, NC, 27695, USA. Electronic address:

Hemoglobin and myoglobin are known to undergo autoxidation, in which the oxyferrous form of the heme is oxidized to the ferric state by O. Dehaloperoxidase-A (DHP-A), a multifunctional catalytic hemoglobin from Amphitrite ornata is an exception and is observed to undergo the reverse process, during which the ferric heme is spontaneously reduced to the oxyferrous form under aerobic conditions. The high reduction potential of DHP (+202 mV at pH 7.

View Article and Find Full Text PDF

Hydrogen-deuterium exchange mass spectrometry (HDX-MS) approach has become a valuable analytical complement to traditional methods. HDX-MS allows the identification of dynamic surfaces in proteins. We have shown that the introduction of various mutations into the amino acid sequence of whale apomyoglobin (apoMb) leads to a change in the number of exchangeable hydrogen atoms, which is associated with a change in its compactness in the native-like condition.

View Article and Find Full Text PDF

Controlling the trans effect induced by nitric oxide and carbon monoxide: H93C myoglobin versus H-NOX sensors and soluble guanylate cyclase.

Protein Sci

December 2024

Laboratoire d'Optique et Biosciences, INSERM U-1182, CNRS UMR 7645, Ecole Polytechnique, Palaiseau, France.

Article Synopsis
  • - Myoglobin was genetically modified by replacing histidine (His93) with cysteine to study how diatomic ligands like carbon monoxide (CO) and nitric oxide (NO) affect bonding and dynamics, using advanced spectroscopy techniques.
  • - This mutation resulted in altered heme bonding and dynamics, which showed different behavior compared to the wild-type myoglobin but paralleled observations in soluble guanylate cyclase (sGC), particularly in how NO and CO interact.
  • - The study found that after light-induced dissociation, NO quickly recombined with the modified myoglobin, showing unique dynamic behaviors including rapid CO rebinding that had not been observed in other myoglobin mutants, suggesting a novel activation mechanism for sGC in the presence
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!