Nucleotide correlations and electronic transport of DNA sequences.

Phys Rev E Stat Nonlin Soft Matter Phys

Departamento de Física, Universidade Federal do Rio Grande do Norte, 59072-970 Natal-RN, Brazil.

Published: February 2005

We use a tight-binding formulation to investigate the transmissivity and wave-packet dynamics of sequences of single-strand DNA molecules made up from the nucleotides guanine G , adenine A , cytosine C , and thymine T . In order to reveal the relevance of the underlying correlations in the nucleotides distribution, we compare the results for the genomic DNA sequence with those of two artificial sequences: (i) the Rudin-Shapiro one, which has long-range correlations; (ii) a random sequence, which is a kind of prototype of a short-range correlated system, presented here with the same first-neighbor pair correlations of the human DNA sequence. We found that the long-range character of the correlations is important to the persistence of resonances of finite segments. On the other hand, the wave-packet dynamics seems to be mostly influenced by the short-range correlations.

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http://dx.doi.org/10.1103/PhysRevE.71.021910DOI Listing

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