Expression analysis of genes involved in brain tumor progression driven by retroviral insertional mutagenesis in mice.

Oncogene

The Rudbeck Laboratory, Department of Genetics and Pathology, University Hospital, SE-751 85 Uppsala, Sweden.

Published: June 2005

Retroviral tagging previously identified putative cancer-causing genes in a mouse brain tumor model where a recombinant Moloney murine leukemia virus encoding the platelet-derived growth factor B-chain (MMLV/PDGFB) was intracerebrally injected in newborn mice. In the present study, expression analysis using cDNA arrays revealed several similarities of virus-induced mouse gliomas with human brain tumors. Brain tumors with short latency contained on average 8.0 retroviral insertions and resembled human glioblastoma multiforme (GBM) whereas long-latency gliomas were of lower grade, similar to human oligodendroglioma (OD) and had 2.3 insertions per tumor. Several known and novel genes of tumor progression or cell markers were differentially expressed between OD- and GBM-like tumors. Array and quantitative real-time PCR analysis demonstrated elevated expression similar to Pdgfralpha of retrovirally tagged genes Abhd2, Ddr1, Fos, Ng2, Ppfibp1, Rad51b and Sulf2 in both glioma types compared to neonatal and adult normal brain. The retrovirally tagged genes Plekhb1, Prex1, Prkg2, Sox10 and 1200004M23Rik were upregulated in the tumors but had a different expression profile than Pdgfralpha whereas Rap1gap, Gli1, Neurl and Camk2b were downregulated in the tumors. The present study accentuates the proposed role of the retrovirally tagged genes in PDGF-driven gliomagenesis and indicates that insertional mutagenesis can promote glioma progression.

Download full-text PDF

Source
http://dx.doi.org/10.1038/sj.onc.1208553DOI Listing

Publication Analysis

Top Keywords

retrovirally tagged
12
tagged genes
12
expression analysis
8
brain tumor
8
tumor progression
8
insertional mutagenesis
8
brain tumors
8
genes
6
brain
5
tumors
5

Similar Publications

Retroviruses are responsible for significant pathology in humans and animals, including the acquired immunodeficiency syndrome and a wide range of malignancies. A crucial yet poorly understood step in the replication cycle is the recognition and selection of unspliced viral RNA (USvRNA) by the retroviral Gag protein, which binds to the psi (Ψ) packaging sequence in the 5' leader, to package it as genomic RNA (gRNA) into nascent virions. It was previously thought that Gag initially bound gRNA in the cytoplasm.

View Article and Find Full Text PDF
Article Synopsis
  • Tsg101 is a protein critical for cellular processes related to transport, specifically involved in recognizing tagged proteins and recruiting other necessary components for transport, particularly during virus budding.* -
  • The study highlights how Tsg101 interacts with ubiquitin (Ub) ligases (E3 enzymes), revealing that disrupting a specific motif in Tsg101 shifts the budding process’s dependency to another ligase, Nedd4L, showing the intricate interplay between these proteins.* -
  • Small molecule experiments showed that disrupting Tsg101’s ability to bind Ub or Nedd4 halted viral budding early in the process, emphasizing Tsg101's role in regulating E3 ligases and its importance in viral particle assembly and overall cellular functions.*
View Article and Find Full Text PDF

Protocol to identify receptors of secreted proteins through CRISPR-Cas9 whole-genome screening technology.

STAR Protoc

December 2024

State Key Laboratory of Membrane Biology, MOE Key Laboratory of Bioinformatics, Tsinghua-Peking Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China. Electronic address:

The interaction between cell surface receptors and their ligands is crucial for intercellular communication. However, current techniques for identifying direct receptor-ligand interactions remain limited. Here, we present a protocol to identify receptors of secreted proteins using a genome-scale CRISPR-Cas9 knockout genetic screening approach.

View Article and Find Full Text PDF

The systematic determination of protein function is a key goal of modern biology, but remains challenging with current approaches. Here we present ORFtag, a versatile, cost-effective and highly efficient method for the massively parallel tagging and functional interrogation of proteins at the proteome scale. ORFtag uses retroviral vectors bearing a promoter, peptide tag and splice donor to generate fusions between the tag and endogenous open reading frames (ORFs).

View Article and Find Full Text PDF

The maturation of HIV-1 virions is a crucial process in viral replication. Although T-cells are a primary source of virus production, much of our understanding of virion maturation comes from studies using the HEK293T human embryonic kidney cell line. Notably, there is a lack of comparative analyses between T-cells and HEK293T cells in terms of virion maturation efficiency in existing literature.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!