Beta-lactam screening by specific residues of the OmpF eyelet.

J Med Chem

GERCTOP UMR6178 CNRS, IFR48, Faculté de Pharmacie, Université de la Méditerranée, 13385 Marseille Cedex 05, France.

Published: March 2005

Beta-lactams use aqueous channels of porins to penetrate Gram-negative bacteria. The L3 loop of Escherichia coli OmpF porin is a key feature that actively contributes to both channel size and electrostatic properties. Acid residues D113, E117, and D121 are responsible for the negative part of the local electrostatic field on this loop. Two substitutions, D113A and D121A, located in the negatively charged cluster of the OmpF eyelet, increase the likelihood of producing bacteria susceptible to several beta-lactams. D113A substitution results in an increase in the ampicillin, cefoxitin, and ceftazidime susceptibility. Molecular modeling suggests that the charges harbored by the beta-lactam molecules interact with the charged residues located inside the porin eyelet.

Download full-text PDF

Source
http://dx.doi.org/10.1021/jm049652eDOI Listing

Publication Analysis

Top Keywords

ompf eyelet
8
beta-lactam screening
4
screening specific
4
specific residues
4
residues ompf
4
eyelet beta-lactams
4
beta-lactams aqueous
4
aqueous channels
4
channels porins
4
porins penetrate
4

Similar Publications

The Optimal Permeation of Cyclic Boronates to Cross the Outer Membrane via the Porin Pathway.

Antibiotics (Basel)

June 2022

Centro Nazionale di Ricerca/Istituto Officina dei Materiali (CNR/IOM), Sezione di Cagliari, c/o Dipartimento di Fisica, Cittadella Universitaria, Monserrato, 09042-IT Cagliari, Italy.

We investigated the diffusion of three cyclic boronates formulated as beta-lactamase inhibitors through the porin OmpF to evaluate their potential to cross OM via the porin pathway. The three nonbeta-lactam molecules diffuse through the porin eyelet region with the same mechanism observed for beta-lactam molecules and diazobicyclooctan derivatives, with the electric dipole moment aligned with the transversal electric field. In particular, the BOH group can interact with both the basic ladder and the acidic loop L3, which is characteristic of the size-constricted region of this class of porins.

View Article and Find Full Text PDF

SecY-mediated quality control prevents the translocation of non-gated porins.

Sci Rep

October 2020

Department Biochemistry of Neurodegenerative Diseases, Institute of Biochemistry and Pathobiochemistry, Ruhr University Bochum, Universitätsstr. 150, 44801, Bochum, Germany.

OmpC and OmpF are among the most abundant outer membrane proteins in E. coli and serve as hydrophilic channels to mediate uptake of small molecules including antibiotics. Influx selectivity is controlled by the so-called constriction zone or eyelet of the channel.

View Article and Find Full Text PDF

We describe here a novel footprinting technique to probe the in vivo structural dynamics of membrane protein. This method utilized in situ generation of hydroxyl radicals to oxidize and covalently modify biomolecules on living Escherichia coli cell surface. After enriching and purifying the membrane proteome, the modified amino acid residues of the protein were identified with tandem mass spectrometry to map the solvent-accessible surface of the protein that will form the footprint of in vivo structure of the protein.

View Article and Find Full Text PDF

Influence of membrane potentials upon reversible protonation of acidic residues from the OmpF eyelet.

Biophys Chem

June 2008

Faculty of Physics, Laboratory of Biophysics & Medical Physics, Al. I. Cuza University, Blvd. King Carol I No. 11, Iasi, Romania.

In this research we employed single-molecule electric recording techniques to investigate effects of the transmembrane and dipole potential on the reversible protonation of acidic residues from the constriction zone of the OmpF porin. Our results support the paradigm according to which the protonation state of aspartate 113 and glutamate 117 residues from the constriction region of OmpF is influenced by the electric potential profile, via an augmentation of the local concentration of protons near these residues mediated by increasing negative transmembrane potentials. We propose that at constant bulk pH, pK(a) values for proton bindings at these residues increase as the applied transmembrane potential increases in its negative values.

View Article and Find Full Text PDF

Beta-lactam screening by specific residues of the OmpF eyelet.

J Med Chem

March 2005

GERCTOP UMR6178 CNRS, IFR48, Faculté de Pharmacie, Université de la Méditerranée, 13385 Marseille Cedex 05, France.

Beta-lactams use aqueous channels of porins to penetrate Gram-negative bacteria. The L3 loop of Escherichia coli OmpF porin is a key feature that actively contributes to both channel size and electrostatic properties. Acid residues D113, E117, and D121 are responsible for the negative part of the local electrostatic field on this loop.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!