A polymerase chain reaction (PCR) protocol for the rapid detection of meningococcal DNA in cerebrospinal fluid (CSF) was developed and optimized. A set of primers based on Neisseria surface protein A (nspA) gene sequence was designed to amplify a 481-bp product specific for N. meningitidis. We tested 85 N. meningitidis strains obtained from patients with meningococcal meningitis and 112 CSF samples from patients with suspected meningococcal meningitis. No amplification of the nspA gene was observed from other Neisseriaceae species (except from N. gonorrhoeae) and from other bacteria frequently associated with meningitis. N. meningitidis belonging to different serogroups yielded the same product after PCR amplification. The sensitivity and specificity of our protocol was determined by comparing the results of specific amplification of nspA gene by PCR reaction (nspA-PCR) with those obtained by conventional methods. All positive samples by conventional methods were confirmed by nspA-PCR, whereas 48% of negative samples after culture and latex agglutination tested positive by nspA-PCR. The use of nspA-PCR proved to be a rapid diagnostic method, in which sensitivity and specificity may not be affected by prior antibiotic treatment.
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http://dx.doi.org/10.1016/j.diagmicrobio.2004.10.004 | DOI Listing |
Int J Syst Evol Microbiol
August 2023
Department of Epidemiology, School of Public Health, Shanxi Medical University, Taiyuan, Shanxi 030001, PR China.
Four Gram-stain-negative, oxidase-positive, non-motile, cocci-shaped bacteria strains (ZJ106, ZJ104, ZJ785 and ZJ930) were isolated from marmot respiratory tracts. Phylogenetic analyses based on 16S rRNA genes, 53 ribosomal protein sequences and 441 core genes supported that all four strains belonged to the genus with close relatives 10022 and ATCC 51483. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values were below the species-level thresholds (95-96 % for ANI, and 70 % for dDDH).
View Article and Find Full Text PDFBioinform Adv
February 2023
School of Computing, Queen's University, Kingston, Ontario, Canada K7L 2N8.
Motivation: The interaction between genetic variables is one of the major barriers to characterizing the genetic architecture of complex traits. To consider epistasis, network science approaches are increasingly being used in research to elucidate the genetic architecture of complex diseases. Network science approaches associate genetic variables' disease susceptibility to their topological importance in the network.
View Article and Find Full Text PDFMicroorganisms
January 2022
State Key Laboratory of Food Science and Technology, Jiangnan University, Wuxi 214122, China.
is prevalent in the human gut and is a potential candidate for next-generation probiotics (NGPs) or biotherapeutics. However, the biodiversity and physiological characteristics of remain unclear. This study isolated 26 novel strains from human feces using a combination of negative screening and prime-specific PCR amplification (NSPA).
View Article and Find Full Text PDFPLoS One
July 2024
Departamento de Biologia Geral, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil.
Spatial trends represent an obstacle to genetic evaluation in maize breeding. Spatial analyses can correct spatial trends, which allow for an increase in selective accuracy. The objective of this study was to compare the spatial (SPA) and non-spatial (NSPA) models in diallel multi-environment trial analyses in maize breeding.
View Article and Find Full Text PDFFEBS Open Bio
July 2021
Molecular Biology, Microbiology and Serology Laboratory, Federal University of Santa Catarina, Florianopolis, Brazil.
Neisseria elongata is part of the commensal microbiota of the oropharynx. Although it is not considered pathogenic to humans, N. elongata has been implicated in several cases of infective endocarditis (IE).
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