Structural polymorphism of Methanothermobacter thermautotrophicus MCM.

J Mol Biol

Department of Biochemistry and Molecular Genetics, Box 800733, University Of Virginia Health Sciences Center, Charlottesville, VA 22908, USA.

Published: February 2005

The minichromosome maintenance (MCM) proteins are essential for replication initiation and elongation in eukarya and archaea. There are six MCM proteins in eukaryotes, and MCM complexes are believed to unwind DNA during chromosomal DNA replication. However, the mechanism and structure of the MCM complexes are not known. Only one MCM is found in the archaeon Methanothermobacter thermautotrophicus (mtMCM), and this provides a simpler system for study. The crystal structure of a mtMCM N-terminal fragment has been solved, but surprisingly only subtle structural changes were seen between the wild-type protein and one having a mutation corresponding to the yeast MCM5 bob1 mutation. The bob1 mutation bypasses the phosphorylation required for activation of MCM in yeast. We have used electron microscopy and three-dimensional reconstruction to examine a number of different fragments of mtMCM, and can visualize a large conformational change within the N-terminal fragment. This offers new insight into the conformational dynamics of MCM and the phosphorylation-bypass phenotype in yeast.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.jmb.2004.11.076DOI Listing

Publication Analysis

Top Keywords

methanothermobacter thermautotrophicus
8
mcm
8
mcm proteins
8
mcm complexes
8
n-terminal fragment
8
bob1 mutation
8
structural polymorphism
4
polymorphism methanothermobacter
4
thermautotrophicus mcm
4
mcm minichromosome
4

Similar Publications

Biomethanation is a crucial process occurring in natural and engineered systems which can reduce carbon dioxide to methane impacting the global carbon cycle. However, little is known about the effect of on-and-off gaseous provision and micronutrients on bioconversion. Here, anaerobic microbiomes underwent intermittent feeding with incremental starvations and selective metal supplementation to assess the impact of hydrogen and carbon dioxide availability on microbial physiology.

View Article and Find Full Text PDF

Improving photosynthetic efficiency of rice via over-expressing a ferredoxin-like protein gene from Methanothermobacter thermautotrophicus.

Physiol Plant

October 2024

Key Laboratory of Molecular Biology and Gene Engineering of Jiangxi Province, College of Life Science, Nanchang University, Nanchang, China.

Article Synopsis
  • Ferredoxins (Fds) play an important role in plant processes such as photosynthesis and nitrogen fixation, but their full function in different organisms is still not fully understood.
  • This study focused on the impact of the MtFd protein from Methanothermobacter thermoautotrophicus on the photosynthetic efficiency of rice, finding that it localized to chloroplasts and significantly improved photosynthetic capacity in transgenic plants compared to wild types.
  • The enhanced photosynthesis led to greater electron transport rates, increased NADPH and net photosynthetic rates, larger grain sizes, and raised levels of reactive oxygen species (ROS) which boosted the antioxidant system's enzymatic activity.
View Article and Find Full Text PDF

Methanothermobacter thermautotrophicus and Alternative Methanogens: Archaea-Based Production.

Adv Biochem Eng Biotechnol

October 2024

Environmental Biotechnology Group, Department of Geosciences, University of Tübingen, Tübingen, Germany.

Methanogenic archaea convert bacterial fermentation intermediates from the decomposition of organic material into methane. This process has relevance in the global carbon cycle and finds application in anthropogenic processes, such as wastewater treatment and anaerobic digestion. Furthermore, methanogenic archaea that utilize hydrogen and carbon dioxide as substrates are being employed as biocatalysts for the biomethanation step of power-to-gas technology.

View Article and Find Full Text PDF

Microfluidic capillary electrophoresis-mass spectrometry (CE-MS) is a rapid and highly accurate method to determine isotopomer patterns in isotopically labeled compounds. Here, we developed a novel method for tracer-based metabolomics using CE-MS for underivatized proteinogenic amino acids. The method consisting of a ZipChip CE system and a high-resolution Orbitrap Fusion Tribrid mass spectrometer allows us to obtain highly accurate data from 1 μl of 100 nmol/l amino acids comparable to a mere 1 [Formula: see text] 10-10 prokaryotic cells.

View Article and Find Full Text PDF

Short- and medium-chain acyl-CoA synthetases catalyze similar two-step reactions in which acyl substrate and ATP bind to form an enzyme-bound acyl-adenylate, then CoA binds for formation of the acyl-CoA product. We investigated the roles of active site residues in CoA binding in acetyl-CoA synthetase (Acs) and a medium-chain acyl-CoA synthetase (Macs) that uses 2-methylbutyryl-CoA. Three highly conserved residues, Arg, Arg, and Arg of Acs (Acs), are predicted to form important interactions with the 5'- and 3'-phosphate groups of CoA.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!