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Peptide nucleic acid (PNA) clamps reduce amplification of host chloroplast and mitochondria rRNA gene sequences and increase detected diversity in 16S rRNA gene profiling analysis of oak-associated microbiota.
Environ Microbiome
January 2025
School of Natural Sciences, Bangor University, Bangor, UK.
Background: Acquiring representative bacterial 16S rRNA gene community profiles in plant microbiome studies can be challenging due to the excessive co-amplification of host chloroplast and mitochondrial rRNA gene sequences that reduce counts of plant-associated bacterial sequences. Peptide Nucleic Acid (PNA) clamps prevent this by blocking PCR primer binding or binding within the amplified region of non-target DNA to stop the function of DNA polymerase. Here, we applied a universal chloroplast (p)PNA clamp and a newly designed mitochondria (m)PNA clamp to minimise host chloroplast and mitochondria amplification in 16S rRNA gene amplicon profiles of leaf, bark and root tissue of two oak species (Quercus robur and Q.
View Article and Find Full Text PDFLeaf Functional Traits to Assess Urban Forest Health Status for Expeditious Analysis in a Mediterranean European Context.
Plants (Basel)
January 2025
Department Biosciences and Territory, University of Molise, 86090 Pesche, Italy.
In the Mediterranean basin, urban forests are widely recognized as essential landscape components, playing a key role in nature-based solutions by enhancing environmental quality and providing a range of ecosystem services. The selection of woody plant species for afforestation and reforestation should prioritize native species that align with the biogeographical and ecological characteristics of the planting sites. Among these, L.
View Article and Find Full Text PDFMitigating negative impacts of drought on oak seedlings performances through plant growth-promoting rhizobacteria.
J Environ Manage
January 2025
INRAE, Aix-Marseille Univ., UMR RECOVER, Aix-en-Provence, France.
Drought stress during the plant's growing season is a serious constraint to plant establishment in arid and semiarid Mediterranean ecosystems. Plant growth promoting rhizobacteria (PGPR) as environmentally friendly and innovative management approach can be used to produce seedlings better adapted to these environments. We tested native PGPR strains isolated from drought-tolerant tree and shrub species originating from two climatically contrasting regions: hot-dry (Dehloran) and milder Mediterranean climate (Ilam).
View Article and Find Full Text PDFDynamic in vivo monitoring of granum structural changes of Ctenanthe setosa (Roscoe) Eichler during drought stress and subsequent recovery.
Physiol Plant
January 2025
Department of Plant Anatomy, Institute of Biology, Faculty of Science, ELTE Eötvös Loránd University, Budapest, Hungary.
Investigating the effects of drought stress and subsequent recovery on the structure and function of chloroplasts is essential to understanding how plants adapt to environmental stressors. We investigated Ctenanthe setosa (Roscoe) Eichler, an ornamental plant that can tolerate prolonged drought periods (40 and 49 days of water withdrawal). Conventional biochemical, biophysical, physiological and (ultra)structural methods combined for the first time in a higher plant with in vivo small-angle neutron scattering (SANS) were used to characterize the alterations induced by drought stress and subsequent recovery.
View Article and Find Full Text PDFResponse of native (Quercus robur L.) and alien (Quercus rubra L.) species to water stress and nutrient input in European temperate ecosystems.
Physiol Plant
January 2025
University of Turin, Department of Agricultural, Forest and Food Science, Grugliasco, Italy.
Drought and nutrient-poor soils can increase the invasive potential of non-native species, further changing the ecosystems they invade. The high adaptability of these alien species, especially in their efficient use of resources, improves their resilience against abiotic stress. Here, we evaluated the response of the North American Quercus rubra L.
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