The proapoptotic Bcl-2 family protein Bid is cleaved by caspase-8 to release the C-terminal fragment tBid, which translocates to the outer mitochondrial membrane and induces massive cytochrome c release and cell death. In this study, we have characterized the conformation of tBid in lipid membrane environments, using NMR and CD spectroscopy with lipid micelle and lipid bilayer samples. In micelles, tBid adopts a unique helical conformation, and the solution NMR (1)H/(15)N HSQC spectra have a single well resolved resonance for each of the protein amide sites. In lipid bilayers, tBid associates with the membrane with its helices parallel to the membrane surface and without trans-membrane helix insertion, and the solid-state NMR (1)H/(15)N polarization inversion with spin exchange at the magic angle spectrum has all of the amide resonances centered at (15)N chemical shift (70-90 ppm) and (1)H-(15)N dipolar coupling (0-5 kHz) frequencies associated with NH bonds parallel to the bilayer surface, with no intensity at frequencies associated with NH bonds in trans-membrane helices. Thus, the cytotoxic activity of tBid at mitochondria may be similar to that observed for antibiotic polypeptides, which bind to the surface of bacterial membranes as amphipathic helices and destabilize the bilayer structure, promoting the leakage of cell contents.
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http://dx.doi.org/10.1074/jbc.M403490200 | DOI Listing |
Angew Chem Int Ed Engl
January 2025
University of Pittsburgh School of Medicine, Structural Biology, 3501 5th Ave., Biomedical Science Tower 3, Room 2044, 15261, Pittsburgh, UNITED STATES OF AMERICA.
Bacterial biofilms are major contributors to persistent infections and antimicrobial resistance, posing significant challenges to treatment. However, obtaining high-resolution structural information on native bacterial biofilms has remained elusive due to the methodological limitations associated with analyzing complex biological samples. Solid-state NMR (ssNMR) has shown promise in this regard, but its conventional application is hindered by sensitivity constraints for unlabeled native samples .
View Article and Find Full Text PDFJ Chem Phys
December 2024
International Tomography Center, Siberian Branch of the Russian Academy of Science, Novosibirsk 630090, Russia.
Signal amplification by reversible exchange (SABRE) employs the non-equilibrium spin order of parahydrogen as a source of strong nuclear magnetic resonance (NMR) signal enhancement, with the objective of increasing NMR sensitivity. In SABRE, a parahydrogen molecule and a substrate form a transient polarization transfer complex. Performed within the high magnetic field of an NMR spectrometer, SABRE enables the hyperpolarization of nuclear spins without additional polarizers.
View Article and Find Full Text PDFJ Biomol NMR
August 2024
Biological and Environmental Science & Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, 23955-6900, Saudi Arabia.
The dynamics of the backbone and side-chains of protein are routinely studied by interpreting experimentally determined N spin relaxation rates. R(N), the longitudinal relaxation rate, reports on fast motions and encodes, together with the transverse relaxation R, structural information about the shape of the molecule and the orientation of the amide bond vectors in the internal diffusion frame. Determining error-free N longitudinal relaxation rates remains a challenge for small, disordered, and medium-sized proteins.
View Article and Find Full Text PDFMagn Reson Chem
November 2024
Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Ankara University, Ankara, Turkey.
Indazole scaffold have two interconvertible tautomeric forms. Regioselectivities were determined for N-benzylations and alkylation of some non-substituted and substituted indazoles, under basic conditions (KCO) in DMF. The ratio of regioisomers occurrence between N:N is almost equal.
View Article and Find Full Text PDFPLoS One
December 2023
Regulatory Research Division, Center for Oncology, Radiopharmaceuticals and Research, Health Canada, Ottawa, ON, Canada.
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