Three-dimensional (3D) electron microscopy (3DEM) aims at the determination of the spatial distribution of the Coulomb potential of macromolecular complexes. The 3D reconstruction of a macromolecule using single-particle techniques involves thousands of 2D projections. One of the key parameters required to perform such a 3D reconstruction is the orientation of each projection image as well as its in-plane orientation. This information is unknown experimentally and must be determined using image-processing techniques. We propose the use of wavelets to match the experimental projections with those obtained from a reference 3D model. The wavelet decomposition of the projection images provides a framework for a multiscale matching algorithm in which speed and robustness to noise are gained. Furthermore, this multiresolution approach is combined with a novel orientation selection strategy. Results obtained from computer simulations as well as experimental data encourage the use of this approach.
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http://dx.doi.org/10.1016/j.jsb.2004.01.006 | DOI Listing |
Heliyon
January 2025
BCN MedTech, Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain.
Deformable image registration is a cornerstone of many medical image analysis applications, particularly in the context of fetal brain magnetic resonance imaging (MRI), where precise registration is essential for studying the rapidly evolving fetal brain during pregnancy and potentially identifying neurodevelopmental abnormalities. While deep learning has become the leading approach for medical image registration, traditional convolutional neural networks (CNNs) often fall short in capturing fine image details due to their bias toward low spatial frequencies. To address this challenge, we introduce a deep learning registration framework comprising multiple cascaded convolutional networks.
View Article and Find Full Text PDFJ Imaging Inform Med
January 2025
Mechanical Engineering Department, Tianjin University, No. 135, Yaguan Road, Haihe Education Park, Jinnan District, Tianjin City, 300350, China.
The hybrid CNN-transformer structures harness the global contextualization of transformers with the local feature acuity of CNNs, propelling medical image segmentation to the next level. However, the majority of research has focused on the design and composition of hybrid structures, neglecting the data structure, which enhance segmentation performance, optimize resource efficiency, and bolster model generalization and interpretability. In this work, we propose a data-oriented octree inverse hierarchical order aggregation hybrid transformer-CNN (nnU-OctTN), which focuses on delving deeply into the data itself to identify and harness potential.
View Article and Find Full Text PDFJ Neurosci Methods
January 2025
Neuroimage Analytics Laboratory and Biggs Institute Neuroimaging Core, Glenn Biggs Institute for Neurodegenerative Disorders, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA; Research Imaging Institute, University of Texas Health Science Center at San Antonio, San Antonio, TX, USA. Electronic address:
Background: The hippocampus plays a crucial role in memory and is one of the first structures affected by Alzheimer's disease. Postmortem MRI offers a way to quantify the alterations by measuring the atrophy of the inner structures of the hippocampus. Unfortunately, the manual segmentation of hippocampal subregions required to carry out these measures is very time-consuming.
View Article and Find Full Text PDFNumer Funct Anal Optim
November 2024
MaLGa Center, Department of Mathematics, University of Genoa, Genova , Italy.
In this work, we present and study Continuous Generative Neural Networks (CGNNs), namely, generative models in the continuous setting: the output of a CGNN belongs to an infinite-dimensional function space. The architecture is inspired by DCGAN, with one fully connected layer, several convolutional layers and nonlinear activation functions. In the continuous setting, the dimensions of the spaces of each layer are replaced by the scales of a multiresolution analysis of a compactly supported wavelet.
View Article and Find Full Text PDFbioRxiv
December 2024
Observatory of Social Media, Luddy School of Informatics, Computing, and Engineering, Indiana University, Indiana, USA.
Single cell RNA-seq (scRNA-seq) technologies provide unprecedented resolution representing transcriptomics at the level of single cell. One of the biggest challenges in scRNA-seq data analysis is the cell type annotation, which is usually inferred by cell separation approaches. In-silico algorithms that accurately identify individual cell types in ongoing single-cell sequencing studies are crucial for unlocking cellular heterogeneity and understanding the biological basis of diseases.
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