The importance of weak protein interactions, such as protein self-association, is widely recognized in a variety of biological and technological processes. Although protein self-association has been studied extensively, much less attention has been devoted to weak protein cross-association, mainly due to the difficulties in measuring weak interactions between different proteins in solution. Here a framework is presented for quantifying the osmotic second virial cross coefficient directly using a modified form of self-interaction chromatography called cross-interaction chromatography. A theoretical relationship is developed between the virial cross coefficient and the chromatographic retention using statistical mechanics. Measurements of bovine serum albumin (BSA)/lysozyme cross-association using cross-interaction chromatography agree well with the few osmometry measurements available in the literature. Lysozyme/alpha-chymotrypsinogen interactions were also measured over a wide range of solution conditions, and some counterintuitive trends were observed that may provide new insight into the molecular origins of weak protein interactions. The virial cross coefficients presented in this work may also provide insight into separation processes that are influenced by protein cross-interactions, such as crystallization, precipitation, and ultrafiltration.
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http://dx.doi.org/10.1110/ps.03419204 | DOI Listing |
J Phys Chem B
July 2024
Laboratory of Supramolecular Nanomaterials and Interfaces, Ecole Polytechnique Fédérale de Lausanne (EPFL), Station 12, 1015 Lausanne, Switzerland.
In this paper, we quantify weak protein-protein interactions in solution using cross-interaction chromatography (CIC) and surface plasmon resonance (SPR) and demonstrate that they can be modulated by the addition of millimolar concentrations of free amino acids. With CIC, we determined the second osmotic virial cross-interaction coefficient () as a proxy for the interaction strength between two different proteins. We perform SPR experiments to establish the binding affinity between the same proteins.
View Article and Find Full Text PDFJ Chem Eng Data
September 2023
Institut für Thermodynamik, Helmut-Schmidt-Universität/Universität der Bundeswehr Hamburg, Holstenhofweg 85, 22043 Hamburg, Germany.
The cross second virial coefficients for the interactions of water (HO) with molecular hydrogen (H) and of hydrogen sulfide (HS) with H were obtained at temperatures in the range from 150 to 2000 K from new intermolecular potential energy surfaces (PESs) for the respective molecule pairs. The PESs are based on interaction energies determined for about 12 000 configurations of each molecule pair employing different high-level quantum-chemical ab initio methods up to coupled cluster with single, double, triple, and perturbative quadruple excitations [CCSDT(Q)]. Furthermore, the interaction energies were corrected for scalar relativistic effects.
View Article and Find Full Text PDFJ Chem Phys
June 2023
Material Measurement Laboratory, Materials Science and Engineering Division, National Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.
We systematically examine the influence of varying temperature (T) over a large range in model poly(vinyl acetate) gels swollen in isopropyl alcohol. The theta temperature Θ, at which the second virial coefficient A2 vanishes, is found to be equal to within numerical uncertainty to the corresponding high molecular mass polymer solution value without cross-links, and we quantify the swelling and deswelling of our model gels relative to their size at T = Θ, as customary for individual flexible polymer chains in solutions. We also quantify the "solvent quality" dependence of the shear modulus G relative to G(T = Θ) and compare to the hydrogel swelling factor, α.
View Article and Find Full Text PDFPhys Chem Chem Phys
December 2022
Université Gustave Eiffel, COSYS/IMSE, 5 Bd Descartes 77454, Champs sur Marne, France.
A four-dimensional-potential energy surface (4D-PES) of the atmospherically relevant carbon dioxide-oxygen molecule (CO-O) van der Waals complex is mapped using the explicitly correlated coupled cluster method with single, double, and perturbative triple excitations (UCCSD(T)-F12b), and extrapolation to the complete basis set (CBS) limit using the cc-pVTZ-F12/cc-pVQZ-F12 bases and the formula. An analytic representation of the 4D-PES was fitted using the method of interpolating moving least squares (IMLS). These calculations predict that the most stable configuration of CO-O complex corresponds to a planar slipped-parallel structure with a binding energy of ∼ -243 cm.
View Article and Find Full Text PDFChem Commun (Camb)
June 2022
School of Chemistry, University of Nottingham, Nottingham NG7 2RD, UK.
Prediction of thermophysical properties from molecular principles requires accurate potential energy surfaces (PES). We present a widely-applicable method to produce first-principles PES from quantum chemistry calculations. Our approach accurately interpolates three-body non-additive interaction data, using the machine learning technique, Gaussian Processes (GP).
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