A definition of minimum distortion paths between two polyhedra in terms of continuous shape measures (CShM) is presented. A general analytical expression deduced for such pathways makes use of one parameter, the minimum distortion constant, that can be easily obtained through the CShM methodology and is herein tabulated for pairs of polyhedra having four to eight vertexes. The work presented here also allows us to obtain representative model molecular structures along the interconversion pathways. Several commonly used polytopal rearrangement pathways are shown to be in fact minimum distortion pathways: the spread path leading from the tetrahedron to the square, the Berry pseudorotation that interconverts a square pyramid and a trigonal bipyramid, and the Bailar twist for the interconversion of the octahedron and the trigonal prism. Examples of applications to the analysis of the stereochemistries of several families of metal complexes are presented.
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http://dx.doi.org/10.1021/ja036479n | DOI Listing |
J Trace Elem Med Biol
January 2025
Center for Global Health Research (CGHR), Saveetha Medical College, Saveetha Institute of Medical and Technical Sciences (SIMATS), Saveetha University, Chennai, India. Electronic address:
[CuL(tmen)] is a sequence of four ternary mononuclear Schiff base copper(II) complexes that are derived from L-valine, suitable 5'-substituted-2'-hydroxyacetophenones (where the substituents are -Cl for L, -Me for L, -OMe for L, and -H for L), and tmen (where tmen-N,N,N',N' tetramethyl ethylenediamine). Without isolating the Schiff base ligand or producing any other intermediate products, all of the complexes were synthesised. These compounds were identified using elemental analysis, molar conductance, UV-Vis, FTIR, EPR, VSM-RT, and CD spectra.
View Article and Find Full Text PDFJ Phys Chem Lett
January 2025
Clausius Institut für Physikalische und Theoretische Chemie, Universität Bonn, Bonn 53115, Germany.
The carpet growth of alkali halide (AH) layers across step edges of substrates enables the growth of seamless and continuous large domains. Yet, information about how the AH layer adapts continuously to the height difference between the terraces on the two sides of a step is only described by continuum models, which do not give details of the ionic displacements. Here, we present a first study of thin epitaxial KCl(100) layers grown on the Ag(111) surface by scanning tunneling microscopy that provides atomistic details for the first time.
View Article and Find Full Text PDFChem Sci
December 2024
Shenzhen Grubbs Institute, Department of Chemistry, Guangdong Provincial Key Laboratory of Catalysis, Southern University of Science and Technology Shenzhen 518055 China
Distortion can play crucial roles in influencing structures and properties, as well as enhancing reactivity or selectivity in many chemical and biological systems. The distortion/interaction or activation-strain model is a popular and powerful method for deciphering the origins of activation energies, in which distortion and interaction energies dictate an activation energy. However, decomposition of local distortion energy at the atomic scale remains less clear and straightforward.
View Article and Find Full Text PDFMicrob Cell Fact
January 2025
Pharmaceutical Microbiology Department, Faculty of Pharmacy, Tanta University, Tanta, 31527, Egypt.
Carbapenem-resistant Klebsiella pneumoniae poses a severe risk to global public health, necessitating the immediate development of novel therapeutic strategies. The current study aimed to investigate the effectiveness of the green algae Arthrospira maxima (commercially known as Spirulina) both in vitro and in vivo against carbapenem-resistant K. pneumoniae.
View Article and Find Full Text PDFJ Chem Phys
December 2024
Department of Chemistry, Sikkim University, Gangtok 737102, India.
Crystallization and amorphization are important processes and different cooling rates cause these transitions. Obtaining pure metals from their molten state is a challenge unless these two are well understood. Here we study both these transitions in liquid Ti using molecular dynamics simulations wherein Ti is modeled with embedded atom potential.
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