Zipf's law and human transcriptomes: an explanation with an evolutionary model.

C R Biol

Division of Gene Expression analysis, The Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima 411-8540, Shizuoka, Japan.

Published: May 2004

Detailed analysis of human gene expression data reveals several patterns of relationship between transcript frequency and abundance rank. In muscle and liver, organs composed primarily of a homogeneous population of differentiated cells, they obey Zipf's law. In cell lines, epithelial tissue and compiled transcriptome data, only high-rankers deviate from it. We propose an evolutionary process model during which expression level changes stochastically proportionally to its intensity, providing a novel interpretation of transcriptome data and of evolutionary constraints on gene expression.

Download full-text PDF

Source
http://dx.doi.org/10.1016/j.crvi.2003.09.031DOI Listing

Publication Analysis

Top Keywords

zipf's law
8
gene expression
8
transcriptome data
8
law human
4
human transcriptomes
4
transcriptomes explanation
4
explanation evolutionary
4
evolutionary model
4
model detailed
4
detailed analysis
4

Similar Publications

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!