The utility of the U.S. Department of Agriculture/Agricultural Research Service (USDA/ARS) package rinse method for recovering Listeria monocytogenes from the surface of contaminated foods was validated in comparison to the standard USDA/Food Safety and Inspection Service (FSIS) product composite enrichment method and two other methods using frankfurters from a lot with a known package prevalence rate of approximately 16% for this pathogen. One hundred packages from this batch of naturally contaminated, commercially prepared frankfurters were examined as follows: (i) the package exudative fluid was removed and tested using the standard USDA/FSIS product composite enrichment method; (ii) approximately 5 to 7 portions of frankfurters were removed to obtain a 25-g composite of meat that was then processed using the standard USDA/FSIS product composite enrichment method: (iii) 50 ml of 0.1% peptone water was added to each package, and the USDA/ARS package rinse method was performed on the remaining contents; and (iv) after removing the rinse fluid, the solid contents remaining in each package were directly enriched using the USDA/FSIS product composite enrichment method. These four methods identified that 7, 6, 15, and 9 of the 100 packages tested positive for the pathogen, respectively. Although no single approach yielded a positive result for every package that tested positive for L. monocytogenes by any one of the four sampling strategies, the USDA/ARS package rinse method was appreciably (P < 0.05) better than either the package exudate enrichment method or the standard USDA/FSIS product composite enrichment method at recovering the bacterium. These findings validate the sensitivity and ease of use of the USDA/ARS package rinse method using naturally contaminated frankfurters and argue strongly for its adoption for routine screening of ready-to-eat products that are prone to surface contamination with undesirable microbes such as L. monocytogenes.
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http://dx.doi.org/10.4315/0362-028x-66.10.1920 | DOI Listing |
Neuro Oncol
January 2025
Division of Oncology, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Background: Central nervous system (CNS) tumors lead to cancer-related mortality in children. Genetic ancestry-associated cancer prevalence and outcomes have been studied, but is limited.
Methods: We performed genetic ancestry prediction in 1,452 pediatric patients with paired normal and tumor whole genome sequencing from the Open Pediatric Cancer (OpenPedCan) project to evaluate the influence of reported race and ethnicity and ancestry-based genetic superpopulations on tumor histology, molecular subtype, survival, and treatment.
Brief Bioinform
November 2024
Department of Automation, School of Electronic Information and Electrical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240, China.
Studying the changes in cellular transcriptional profiles induced by small molecules can significantly advance our understanding of cellular state alterations and response mechanisms under chemical perturbations, which plays a crucial role in drug discovery and screening processes. Considering that experimental measurements need substantial time and cost, we developed a deep learning-based method called Molecule-induced Transcriptional Change Predictor (MiTCP) to predict changes in transcriptional profiles (CTPs) of 978 landmark genes induced by molecules. MiTCP utilizes graph neural network-based approaches to simultaneously model molecular structure representation and gene co-expression relationships, and integrates them for CTP prediction.
View Article and Find Full Text PDFClin J Am Soc Nephrol
January 2025
Department of Medicine, Division of Nephrology, University of California, Davis, CA, USA.
Background: Mitochondria-driven oxidative/redox stress and inflammation play a major role in chronic kidney disease (CKD) pathophysiology. Compounds targeting mitochondrial metabolism may improve mitochondrial function, inflammation, and redox stress; however, there is limited evidence of their efficacy in CKD.
Methods: We conducted a pilot randomized, double-blind, placebo-controlled crossover trial comparing the effects of 1200 mg/day of coenzyme Q10 (CoQ10) or 1000 mg/day of nicotinamide riboside (NR) supplementation to placebo in 25 people with moderate-to-severe CKD (estimated glomerular filtration rate [eGFR] <60mL/min/1.
Ann Med
December 2025
Department of Neurosurgery, The Affiliated Hospital of Guizhou Medical University, Guiyang, Guizhou, PR China.
Objective: This study aims to explore the role of exosome-related genes in breast cancer (BRCA) metastasis by integrating RNA-seq and single-cell RNA-seq (scRNA-seq) data from BRCA samples and to develop a reliable prognostic model.
Methods: Initially, a comprehensive analysis was conducted on exosome-related genes from the BRCA cohort in The Cancer Genome Atlas (TCGA) database. Three prognostic genes (JUP, CAPZA1 and ARVCF) were identified through univariate Cox regression and Lasso-Cox regression analyses, and a metastasis-related risk score model was established based on these genes.
J Med Internet Res
January 2025
Institute of Learning Sciences and Technologies, National Tsing Hua University, Hsinchu, Taiwan.
Background: Health misinformation undermines responses to health crises, with social media amplifying the issue. Although organizations work to correct misinformation, challenges persist due to reasons such as the difficulty of effectively sharing corrections and information being overwhelming. At the same time, social media offers valuable interactive data, enabling researchers to analyze user engagement with health misinformation corrections and refine content design strategies.
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