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BuDDI: Bulk Deconvolution with Domain Invariance to predict cell-type-specific perturbations from bulk.
PLoS Comput Biol
January 2025
Department of Biomedical Informatics, University of Colorado Anschutz School of Medicine, Aurora, Colorado, United States of America.
While single-cell experiments provide deep cellular resolution within a single sample, some single-cell experiments are inherently more challenging than bulk experiments due to dissociation difficulties, cost, or limited tissue availability. This creates a situation where we have deep cellular profiles of one sample or condition, and bulk profiles across multiple samples and conditions. To bridge this gap, we propose BuDDI (BUlk Deconvolution with Domain Invariance).
View Article and Find Full Text PDFInterdisciplinary systems may restore the healthcare professional-patient relationship in electronic health systems.
J Am Med Inform Assoc
January 2025
Department of Biomedical Informatics, Vanderbilt University Medical Center, Nashville, TN, 37203, United States.
Objective: To develop a framework that models the impact of electronic health record (EHR) systems on healthcare professionals' well-being and their relationships with patients, using interdisciplinary insights to guide machine learning in identifying value patterns important to healthcare professionals in EHR systems.
Materials And Methods: A theoretical framework of EHR systems' implementation was developed using interdisciplinary literature from healthcare, information systems, and management science focusing on the systems approach, clinical decision-making, and interface terminologies.
Observations: Healthcare professionals balance personal norms of narrative and data-driven communication in knowledge creation for EHRs by integrating detailed patient stories with structured data.
Bad year econometrics: Agent-based modeling of risk management strategies under varying regimes of environmental change.
Sci Adv
January 2025
Department of Archaeology and Heritage Studies, Aarhus University, Aarhus, Denmark.
Resilience-the ability of socio-ecological systems to withstand and recover from shocks-is a key research and policy focus. Definitions of resilience differ between disciplines, however, and the term remains inadequately operationalized. Resilience is the outcome of variable behavioral decisions, yet the process itself and the strategies behind it have rarely been addressed quantitatively.
View Article and Find Full Text PDFClinical and Imaging Pulmonary Manifestations in IgG4-Related Disease.
J Clin Rheumatol
November 2024
Servicio de Reumatología Hospital JM Cullen, Santa Fe, Argentina.
Objectives: The aims of this study were to describe the frequency of pleuropulmonary computed tomography (CT) findings in patients with IgG4-related disease (IgG4-RD) and to compare clinical and laboratory characteristics between patients with and without pleuropulmonary involvement in chest CT.
Methods: This is a study conducted within the IgG4-RD study group of the Argentine Society of Rheumatology (GESAR IgG4) cohort of patients with IgG4-RD. Member centers of the group were requested to submit pulmonary CT scans of the patients.
Self- and Observer Reports of Personality.
Annu Rev Psychol
January 2025
Department of Psychology, University of Calgary, Calgary, Alberta, Canada; email:
People's personality trait levels are often assessed by obtaining self-reports or observer (informant) reports on questionnaires (inventories). When the target person is closely acquainted with the observer-as in the case of spouses, close relatives, or close friends-several findings are obtained for full-length measures of the Big Five (Five-Factor Model) or HEXACO personality factors. First, mean scores tend to be comparable between self-reports and observer reports, although Openness to Experience tends to be higher in self-reports than in observer reports.
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