Histologic grading systems are used to guide diagnosis, therapy, and audit on an international basis. The reproducibility of grading systems is usually tested within small groups of pathologists who have previously worked or trained together. This may underestimate the international variation of scoring systems. We therefore evaluated the reproducibility of an established system, the Banff classification of renal allograft pathology, throughout Europe. We also sought to improve reproducibility by providing individual feedback after each of 14 small groups of cases. Kappa values for all features studied were lower than any previously published, confirming that international variation is greater than interobserver variation as previously assessed. A prolonged attempt to improve reproducibility, using numeric or graphical feedback, failed to produce any detectable improvement. We then asked participants to grade selected photographs, to eliminate variation induced by pathologists viewing different areas of the slide. This produced improved kappa values only for some features. Improvement was influenced by the nature of the grade definitions. Definitions based on "area affected" by a process were not improved. The results indicate the danger of basing decisions on grading systems that may be applied very differently in different institutions.
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PLoS Pathog
January 2025
REHABS, International Research Laboratory, CNRS-NMU-UCBL, George Campus, Nelson Mandela University, George, South Africa.
Plasmodium vivax is the predominant malaria parasite in Latin America. Its colonization history in the region is rich and complex, and is still highly debated, especially about its origin(s). Our study employed cutting-edge population genomic techniques to analyze whole genome variation from 620 P.
View Article and Find Full Text PDFEcotoxicology
January 2025
Department of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, USA.
Songbird reproductive success can decline from consuming mercury-contaminated aquatic insects, but assessments of hydrologic conditions influencing songbird mercury exposure are lacking. We monitored breast feather total mercury (THg) concentrations and reproductive success in the U.S.
View Article and Find Full Text PDFEnviron Monit Assess
January 2025
Air Quality, Climate Change and Health (ACH) Lab, Department of Public Health and Informatics, Jahangirnagar University, 1342, Savar, Dhaka, Bangladesh.
The growing global attention on urban air quality underscores the need to understand the spatiotemporal dynamics of nitrogen dioxide (NO) and its environmental and anthropogenic factors, particularly in cities like Dhaka (Gazipur), Bangladesh, which suffers from some of the world's worst air quality. This study analysed NO concentrations in Gazipur from 2019 to 2022 using Sentinel-5P TROPOMI data on the Google Earth Engine (GEE) platform. Correlations and regression analysis were done between NO levels and various environmental factors, including land surface temperature (LST), normalized difference vegetation index (NDVI), land use and land cover (LULC), population density, road density, settlement density, and industry density.
View Article and Find Full Text PDFJ Orthop Case Rep
January 2025
Department of Orthopaedic Oncology, Aarhus University Hospital, Aarhus N, Denmark.
Introduction: In recent years, numerous hospitals have established in-house three-dimensional (3D) printing centers, enabling health-care facilities to leverage the transformative capabilities of additive manufacturing technology on their premises. With this emerging opportunity arises a necessity to undertake a thorough assessment of the manufactured tools employed in clinical practice. The objectives of this article are to describe the pathway of in-house printing and evaluate the accuracy of 3D-printed specific instruments.
View Article and Find Full Text PDFMol Biol Evol
January 2025
Department of Molecular Biology, Max Planck Institute for Biology Tübingen, 72076 Tübingen, Germany.
Plant cells have two major organelles with their own genomes: chloroplasts and mitochondria. While chloroplast genomes tend to be structurally conserved, the mitochondrial genomes of plants, which are much larger than those of animals, are characterized by complex structural variation. We introduce TIPPo, a user-friendly, reference-free assembly tool that uses PacBio high-fidelity long-read data and that does not rely on genomes from related species or nuclear genome information for the assembly of organellar genomes.
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