AI Article Synopsis

  • The study investigates the significance of pseudouridine (Psi) modifications in rRNA, particularly focusing on their impact on the peptidyl transferase center.
  • Depleting certain snoRNAs in yeast led to substantial translation impairment when a conserved Psi in the tRNA A site was lost, while other Psis had minimal effects.
  • The findings suggest that some Psis may enhance ribosome function by altering rRNA structure, with potential implications for the role of snoRNPs in modifying ribosome structure.

Article Abstract

One of the oldest questions in RNA science is the role of nucleotide modification. Here, the importance of pseudouridine formation (Psi) in the peptidyl transferase center of rRNA was examined by depleting yeast cells of 1-5 snoRNAs that guide a total of six Psi modifications. Translation was impaired substantially with loss of a conserved Psi in the A site of tRNA binding. Depletion of other Psis had subtle or no apparent effect on activity; however, synergistic effects were observed in some combinations. Pseudouridines are proposed to enhance ribosome activity by altering rRNA folding and interactions, with some Psis having greater effects than others. The possibility that modifying snoRNPs might affect ribosome structure in other ways is also discussed.

Download full-text PDF

Source
http://dx.doi.org/10.1016/s1097-2765(03)00040-6DOI Listing

Publication Analysis

Top Keywords

ribosome structure
8
peptidyl transferase
8
transferase center
8
structure activity
4
activity altered
4
altered cells
4
cells lacking
4
lacking snornps
4
snornps form
4
form pseudouridines
4

Similar Publications

Metals in Motion: Understanding Labile Metal Pools in Bacteria.

Biochemistry

January 2025

Department of Microbiology, Cornell University, Ithaca, New York 14853-8101, United States.

Metal ions are essential for all life. In microbial cells, potassium (K) is the most abundant cation and plays a key role in maintaining osmotic balance. Magnesium (Mg) is the dominant divalent cation and is required for nucleic acid structure and as an enzyme cofactor.

View Article and Find Full Text PDF

Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity.

Nat Commun

January 2025

Laboratoire de Biologie Structurale de la Cellule (BIOC), CNRS, Ecole polytechnique, Institut Polytechnique de Paris, Palaiseau, 91120, France.

The archaeal ribosome is of the eukaryotic type. TACK and Asgard superphyla, the closest relatives of eukaryotes, have ribosomes containing eukaryotic ribosomal proteins not found in other archaea, eS25, eS26 and eS30. Here, we investigate the case of Saccharolobus solfataricus, a TACK crenarchaeon, using mainly leaderless mRNAs.

View Article and Find Full Text PDF

In the spore-forming bacterium Bacillus subtilis transcription and translation are uncoupled and the translational machinery is located at the cell poles. During sporulation, the cell undergoes morphological changes including asymmetric division and chromosome translocation into the forespore. However, the fate of translational machinery during sporulation has not been described.

View Article and Find Full Text PDF

Medicinal plants often harbour various endophytic actinomycetia, which are well known for their potent antimicrobial properties and plant growth-promoting traits. In this study, we isolated an endophytic actinomycetia, A13, from the leaves of tea clone P312 from the MEG Tea Estate, Meghalaya, India. The isolate A13 was identified as Streptomyces sp.

View Article and Find Full Text PDF

Basic Science and Pathogenesis.

Alzheimers Dement

December 2024

Glenn Biggs Institute for Alzheimer's & Neurodegenerative Diseases, The University of Texas Health Science Center at San Antonio, San Antonio, TX, USA.

Background: Oral and gut microbiomes have been associated with Alzheimer's disease and related dementias (ADRD). Although the role of the gut microbiome and gut dysbiosis in ADRD has been extensively studied, research on the oral microbiome is lacking. Moreover, the synergetic contribution of oral and gut microbiomes to ADRD is unexplored.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!