The electrochemical conductivities of HCL and DCI were measured in: H(2)O and D(2)O; in methanol and fully deuterated methanol; and in water-methanol solutions. The single channel conductances to H(+) (g(H)) and D(+) (g(D)) in various gramicidin A (gA) ion channels incorporated in glycerylmonooleate planar bilayers were also measured. Kinetic isotope effects (KIE) were estimated from the ratio of conductivity measurements. In 1 and 5 M HCl aqueous solutions and in 1 M HCl+3.7 M methanol, the KIE ( approximately 1.35) is not different from values previously determined in dilute acid solutions. This suggests that the mobility of protons in those solutions is largely determined by proton transfer. In 10 M HCl, however, where the mobility of protons is likely to be determined by hydrodynamic diffusion, the measured KIE is considerably larger (1.47). Possible causes for this effect are discussed. The KIE of proton conductivities in 5 and 50 mM HCl in methanol and d-methanol is approximately 1.15. This is considerably smaller than the ratio between conductivities of 5 mM KCl in methanol and d-methanol (1.24). The KIE values (1.22-1.37) for g(H) in gA channels in 1 M HCl are significantly larger than for other monovalent cations and consistent with H(+) transfer. Methanol reduces g(H) in gA channels. The KIE of this effect is not different from the one measured in the absence of methanol. Possible mechanisms for the methanol-induced block of H(+) conductivities in solution and gA channels are discussed.
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http://dx.doi.org/10.1016/s0301-4622(02)00255-7 | DOI Listing |
Sci Rep
January 2025
Department of Physics and Astronomy, Aarhus University, Aarhus, Denmark.
Roaming reactions involving a neutral fragment of a molecule that transiently wanders around another fragment before forming a new bond are intriguing and peculiar pathways for molecular rearrangement. Such reactions can occur for example upon double ionization of small organic molecules, and have recently sparked much scientific interest. We have studied the dynamics of the [Formula: see text]-roaming reaction leading to the formation of [Formula: see text] after two-photon double ionization of ethanol and 2-aminoethanol, using an XUV-UV pump-probe scheme.
View Article and Find Full Text PDFMolecules
January 2025
Department of Chemical Technology, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Skłodowska University, 3 Maria Curie-Skłodowska Square, 20-031 Lublin, Poland.
The reaction mechanism of soot oxidation on Mn (MnO), Mn-Ce (MnO-CeO), and Ce (CeO) catalysts in tight contact conditions was investigated using ITKA (isotopic transient kinetic analysis). The obtained results suggest that lattice-bulk oxygen from all studied catalysts takes part in the soot oxidation process but with varying relative contributions: for the Ce catalyst, this contribution is practically 100%, whereas with decreasing Ce content in Mn-Ce catalysts, the significance of lattice-bulk oxygen for soot oxidation diminishes. For the Mn catalyst, it is estimated to be below 50%.
View Article and Find Full Text PDFBiomolecules
January 2025
Institute of Chemical Kinetics and Combustion SB RAS, 3 Institutskaya Street, Novosibirsk 630090, Russia.
In the present work, we performed calculations of the kinetic isotope effect (KIE) on H/D, N/N, O/O, and C/C isotopic substitution in the dissociation of beta-sheet polyglycine dimers of different lengths into two monomer chains. This dissociation reaction, proceeding via breaking of the interchain hydrogen bonds (H-bonds), is considered to be a model of unfolding of the secondary structure of proteins. The calculated strengthening of the interchain hydrogen bonds N-H⋯O=C due to heavy isotope substitution decreases in the row H/D >> N/N > O/O > C/C.
View Article and Find Full Text PDFNat Commun
January 2025
University of St Andrews, School of Biology, North Haugh, Biomolecular Sciences Building, St Andrews, UK.
Cyclic dipeptides are produced by organisms across all domains of life, with many exhibiting anticancer and antimicrobial properties. Oxidations are often key to their biological activities, particularly C-C bond oxidation catalysed by tailoring enzymes including cyclodipeptide oxidases. These flavin-dependent enzymes are underexplored due to their intricate three-dimensional arrangement involving multiple copies of two distinct small subunits, and mechanistic details underlying substrate selection and catalysis are lacking.
View Article and Find Full Text PDFGels
December 2024
Department of Physiology, Iuliu Haţieganu University of Medicine and Pharmacy, Clinicilor 1, 400006 Cluj-Napoca, Romania.
In this study, alginate-based composite beads were developed for the delivery of resveratrol, a compound with therapeutic potential. Two formulations were prepared: one with sodium alginate and resveratrol (AR) and another incorporating graphene nanoplatelets (AGR) to improve drug release control. The beads were formed by exploiting alginate's ability to gel via ionic cross-linking.
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