A hallmark of cellular ageing is the failure of senescing cells to initiate DNA synthesis and transition from G1 into S phase of the cell cycle. This transition is normally dependent on or concomitant with expression of a set of genes specifying cellular proteins, some of which directly participate in DNA replication. Deregulation of this gene expression may play a pivotal role in the ageing process. The number of known enzymes and co-factors required to maintain integrity of the genome during eukaryotic DNA replication has increased significantly in the past few years, and includes proteins essential for DNA replication and repair, as well as for cell cycle regulation. In eukaryotic cells, ranging from yeast to man, a replicative enzyme essential for initiation of transcription is DNA polymerase alpha (pol alpha), the activity of which is coordinately regulated with the initiation of DNA synthesis. DNA pol alpha, by means of its primase subunit, has the unique ability to initiate de novo DNA synthesis, and as a consequence, is required for the initiation of continuous (leading-strand) DNA synthesis at an origin of replication, as well as for initiation of discontinuous (lagging-strand) DNA synthesis. The dual role of the pol alpha-primase complex makes it a potential interactant with the regulatory mechanisms controlling entry into S phase. The purpose of this review is to address the regulation and/or modulation of DNA pol alpha during ageing that may play a key role in the cascade of events which ultimately leads to the failure of old cells to enter or complete S phase of the cell cycle.
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http://dx.doi.org/10.1016/s1568-1637(02)00011-9 | DOI Listing |
Background: The essential trace element iron, which can occur in various oxidation states, is required for many biochemical reactions and processes in the human body.
Methods: This review summarizes the current knowledge about the physiology of iron metabolism.
Results: The physiological functions comprise oxygen transport in the blood, electron transport processes, DNA synthesis and gene regulation, the regulation of cell growth and differentiation, and the energy production in mitochondria.
Small
March 2025
Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, 34141, Republic of Korea.
The fabrication of liquid crystalline (LC) organogel via supramolecular interactions between Deoxyribonucleic acid (DNA) and lyotropic cationic surfactant containing cyanobiphenyl moiety is reported. The fabricated organogel endows dominantly viscous behavior in dimethyl sulfoxide (DMSO) and elastic behavior in n-propanol (n-PrOH), respectively. By judiciously controlling the viscosity, DMSO organogels can be drawn to form a fiber with an elongation of up to 4.
View Article and Find Full Text PDFNat Cell Biol
March 2025
Laboratory of Integrative Systems Physiology, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Mitochondria are multifaceted organelles with crucial roles in energy generation, cellular signalling and a range of synthesis pathways. The study of mitochondrial biology is complicated by its own small genome, which is matrilineally inherited and not subject to recombination, and present in multiple, possibly different, copies. Recent methodological developments have enabled the analysis of mitochondrial DNA (mtDNA) in large-scale cohorts and highlight the far-reaching impact of mitochondrial genetic variation.
View Article and Find Full Text PDFNat Commun
March 2025
Université Paris Cité, CNRS, Institut Jacques Monod, Paris, France.
While DNA:RNA hybrids contribute to multiple genomic transactions, their unscheduled formation is a recognized source of DNA lesions. Here, through a suite of systematic screens, we rather observed that a wide range of yeast mutant situations primarily triggering DNA damage actually leads to hybrid accumulation. Focusing on Okazaki fragment processing, we establish that genic hybrids can actually form as a consequence of replication-born discontinuities such as unprocessed flaps or unligated Okazaki fragments.
View Article and Find Full Text PDFMethods Mol Biol
March 2025
Laboratory of Entomology and Phytopathology, Molecular Plant Virology, State University of the North Fluminense Darcy Ribeiro, Rio de Janeiro, Brazil.
Members of the family Geminiviridae have single-stranded (ss), circular DNA genomes that are encapsidated into non-enveloped quasi-icosahedral twinned (geminate) particles, causing yield losses in several economically important crops worldwide. Sequence-based approaches used for molecular characterization of Geminiviridae genomes, associated with powerful bioinformatic tools, provided a better picture about the true extent of the Geminiviridae species diversity. This chapter describes procedures to reconstruct Geminiviridae phylogenetic relationships based on coat protein (CP) and replication-associated protein (Rep) amino acid sequences and full-length nucleotide genomes using both maximum likelihood (ML) and Bayesian inference (BI) approaches.
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