Dramatically different CID (collision-induced dissociation) spectra are obtained when the complex [Zn(dien-glucose)](+) is electrosprayed from acidic and basic solutions. To understand this peculiar phenomenon, an in-depth mechanistic study was performed on one of the product ions that is present when the initial complex is diluted in basic solution but absent when the complex is diluted with acidic solution. On the basis of the results of this study, the differences in the CID spectra can be rationalized by the fact that the complex electrosprayed from basic solution was kinetically trapped, with the deprotonation site distal from the metal center. Under acidic conditions, the deprotonation site is at a hydroxyl group coordinated to the metal ion. A variety of experiments support this hypothesis. The studies herein underscore the importance of using identical solvent conditions when comparing sets of CID spectra. The data also highlight a very interesting phenomenon involving deprotonation of a hydroxyl group, which was several atoms away from the Zn(II) metal center.

Download full-text PDF

Source
http://dx.doi.org/10.1021/jo016309yDOI Listing

Publication Analysis

Top Keywords

cid spectra
12
solvent conditions
8
complex diluted
8
basic solution
8
deprotonation site
8
metal center
8
hydroxyl group
8
solvent effects
4
effects tandem
4
tandem mass
4

Similar Publications

The Site of Protonation Affects the Dissociation of Protonated α- and β-Pinene Ions.

Rapid Commun Mass Spectrom

March 2025

Department of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Canada.

Rationale: In electrospray ionization and atmospheric pressure chemical ionization, the protonation site directly guides the ion's dissociation. But what if the site of protonation is ambiguous? In this study, we explored the unimolecular reactions of protonated α- and β-pinene ions with a combination of tandem mass spectrometry and theory. Each has multiple potential protonation sites that influence their chemistry.

View Article and Find Full Text PDF

Tandem mass spectrometry (MS) is one of the most effective methods to obtain the structures of organic molecules, enabling the observation of multigenerational ion fragments. Collision-induced dissociation (CID) is currently the most mature technique for mass spectrometry analysis. Ion trap mass spectrometry (ITMS) is favored for on-site detection field, due to its ability of MS analysis with a single trap and its small size.

View Article and Find Full Text PDF

Introduction: Liquid chromatography-mass spectrometry (LC-MS) has enhanced the rapid, accurate analysis of complex plant extracts, eliminating the need for extensive isolation. Tandem mass spectrometry (MS/MS) further enhances this process by providing detailed structural information. However, differentiating structural isomers remains a challenge due to their minor spectral and structural differences.

View Article and Find Full Text PDF

Coaxial Helices in Chiral Supramolecular Aggregates from Highly Hindered Chiral Allenes.

Angew Chem Int Ed Engl

December 2024

CINBIO and Departamento de Química Orgánica, Campus Lagoas-Marcosende, Universidade de Vigo, Vigo, E-36310, Spain.

Chiral allenes self-assembly following a cooperative mechanism into a supramolecular chiral aggregate consisting of two coaxial helices: the internal helix described by the allene stack and the external helix which consist in a 4-helix described by the four allene substituents. More precisely, this supramolecular aggregate possesses six axially chiral elements within its structure-the allene, the allene stack (internal helix) and the stacks of the four allene substituents (external 4-helix)-. Interestingly, slight variations in the magnitude of the tilting degree while keeping its P- or M- orientation (internal helix) can vary the orientation of the 4-axial motifs at the external helix.

View Article and Find Full Text PDF
Article Synopsis
  • The study introduces MS2Lipid, a machine learning model designed to improve the prediction of lipid subclasses from mass spectrometry data, overcoming limitations in existing software that rely on manual curation.
  • The model achieves an impressive 97.4% accuracy in classifying lipid subclasses from extensive datasets, using a new descriptor called MCH for better specificity.
  • MS2Lipid's effectiveness is further demonstrated through its application in annotating lipid metabolites linked to obesity, highlighting its potential for biological and clinical lipidomics research.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!