ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation.

J Am Soc Mass Spectrom

The Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.

Published: February 2002

Data-dependent external m/z selection and accumulation of ions is demonstrated in use with ESI-FTICR instrumentation, with two different methods for ion selection being explored. One method uses RF/DC quadrupole filtering and is described in use with an 11.5 tesla (T) FTICR instrument, while the second method employs RF-only resonance dipolar excitation selection and is described in use with a 3.5 T FTICR instrument. In both methods ions are data-dependently selected on the fly in a linear quadrupole ion guide, then accumulated in a second linear RF-only quadrupole trap that immediately follows. A major benefit of ion preselection prior to external accumulation is the enhancement of ion populations for low-level species. This development is expected to expand the dynamic range and sensitivity of FTICR for applications including analysis of complex polypeptide mixtures (e.g., proteomics).

Download full-text PDF

Source
http://dx.doi.org/10.1016/S1044-0305(01)00343-9DOI Listing

Publication Analysis

Top Keywords

data-dependent external
8
ion selection
8
selection accumulation
8
fticr instrument
8
ion
5
esi-fticr mass
4
mass spectrometry
4
spectrometry employing
4
employing data-dependent
4
external ion
4

Similar Publications

A deep learning framework for hepatocellular carcinoma diagnosis using MS1 data.

Sci Rep

November 2024

SanOmics AI Co., Ltd, Lingping District, Hangzhou, 311103, China.

Article Synopsis
  • Clinical proteomics is crucial for understanding diseases and finding biomarkers, but there are challenges in accurately identifying peptides and proteins for diagnosis.
  • The new deep learning model, "MS1Former," allows for direct classification of liver cancer tissues and normal tissues using raw MS1 spectra, improving accuracy without needing peptide precursor identification.
  • The model shows excellent performance across various datasets and has potential for broader applications in tumor classification, while also being interpretable for further insights.
View Article and Find Full Text PDF

Combining Data Independent Acquisition With Spike-In SILAC (DIA-SiS) Improves Proteome Coverage and Quantification.

Mol Cell Proteomics

October 2024

Division of Proteome Dynamics, Max Delbrück Center for Molecular Medicine, Berlin, Germany; Charité, Universitätsmedizin Berlin, Berlin, Germany. Electronic address:

Data-independent acquisition (DIA) is increasingly preferred over data-dependent acquisition due to its higher throughput and fewer missing values. Whereas data-dependent acquisition often uses stable isotope labeling to improve quantification, DIA mostly relies on label-free approaches. Efforts to integrate DIA with isotope labeling include chemical methods like mass differential tags for relative and absolute quantification and dimethyl labeling, which, while effective, complicate sample preparation.

View Article and Find Full Text PDF

Hybrid volumetric medical image segmentation models, combining the advantages of local convolution and global attention, have recently received considerable attention. While mainly focusing on architectural modifications, most existing hybrid approaches still use conventional data-independent weight initialization schemes which restrict their performance due to ignoring the inherent volumetric nature of the medical data. To address this issue, we propose a learnable weight initialization approach that utilizes the available medical training data to effectively learn the contextual and structural cues via the proposed self-supervised objectives.

View Article and Find Full Text PDF

[Detection of three metabolites of xylene in urine samples by solid-phase extraction coupled with liquid chromatography-mass spectrometry].

Zhonghua Lao Dong Wei Sheng Zhi Ye Bing Za Zhi

October 2023

Key Laboratory of Health Risk Appraisal for Trace Toxic Chemicals of Zhejiang Province, Department of Physical and Chemical Testing, Ningbo Municipal Center for Disease Control and Prevention, Ningbo 315010, China.

To establish a method for the rapid determination of the three metabolites of xylene, 2-methylmarmaluronic acid, 3-methylmarmaluronic acid and 4-methylmarmaluronic acid, in urine of occupationally exposed workers by ultra-performance liquid chromatography-high resolution mass spectrometry (UPLC-HRMS) . In July 2022, urine samples were diluted and extracted with pH=6.86 phosphate cache solution, cleaned up by a MAX solid-phase extraction (SPE) column and separated by an Accucore Ph/Hexyl column (100 mm×2.

View Article and Find Full Text PDF

Are hip biomechanics during running associated with symptom severity or cam morphology size in male football players with FAI syndrome?

Gait Posture

September 2023

La Trobe Sport and Exercise Medicine Research Centre, School of Allied Health, Human Services and Sport, La Trobe University, Melbourne, Australia.

Background: Femoroacetabular impingement (FAI) syndrome is considered a motion-related condition. Little is known about the influence of symptom severity and cam morphology on hip biomechanics for individuals with FAI syndrome.

Research Question: Are hip biomechanics during running associated with symptom severity or cam morphology size in male football players with FAI syndrome?

Methods: Forty-nine male, sub-elite football (soccer or Australian football) players (mean age= 26 years) with FAI syndrome completed the International Hip Outcome Tool-33 (iHOT-33) and Copenhagen Hip and Groin Outcome Score (HAGOS) and underwent radiographic evaluation.

View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!