Differential display banding patterns of liver and nine other tissues were produced in order to isolate porcine expressed sequence tags (ESTs), representing genes active in liver while avoiding redundant analysis of housekeeping genes. We cloned and sequenced those cDNA fragments that were unique to the liver banding pattern or that appeared in liver and a maximum of four other tissues. We analyzed 240 sequences that represent 200 distinct ESTs/genes and that make up the first list of liver ESTs in the pig. Ninety-one clones correspond to known genes and 109 clones showed no significant match with any gene or DNA sequence in GenBank and EMBL databases. Fifty-eight clones represent 18 distinct genes, the most abundant representing the albumin gene (13/240). The majority of genes that were represented by more than one clone code for proteins released by the liver into the plasma. We demonstrated the suitability of the differential display reverse transcription polymerase chain reaction approach for the detection of porcine liver ESTs. It is shown that this approach is appropriate to reduce redundant analysis of clones containing the same sequence.
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http://dx.doi.org/10.1016/s0378-1119(01)00775-2 | DOI Listing |
Biofactors
January 2025
Department of Oncology, Shanghai East Hospital, Tongji University School of Medicine, Tongji University, Shanghai, People's Republic of China.
Breast cancer continues to be a major health issue for women worldwide, with vimentin (VIM) identified as a crucial factor in its progression due to its role in cell migration and the epithelial-to-mesenchymal transition (EMT). This study focuses on elucidating VIM's regulatory mechanisms on the miR-615-3p/PICK1 axis. Utilizing the 4T1 breast cancer cell model, we first used RNA-seq and proteomics to investigate the changes in the APA of PICK1 following VIM knockout (KO).
View Article and Find Full Text PDFAging Biol
January 2023
Center for Computational Molecular Biology, Brown University, Providence, RI, USA.
Cellular senescence (CS) is a state of irreversible cell cycle arrest, and the accumulation of senescent cells contributes to age-associated organismal decline. The detrimental effects of CS are due to the senescence-associated secretory phenotype (SASP), an array of signaling molecules and growth factors secreted by senescent cells that contribute to the sterile inflammation associated with aging tissues. Recent studies, both in vivo and in vitro, have highlighted the heterogeneous nature of the senescence phenotype.
View Article and Find Full Text PDFBrief Bioinform
November 2024
School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dongchuan Road, 200240 Shanghai, China.
Identifying spatial domains is critical for understanding breast cancer tissue heterogeneity and providing insights into tumor progression. However, dropout events introduces computational challenges and the lack of transparency in methods such as graph neural networks limits their interpretability. This study aimed to decipher disease progression-related spatial domains in breast cancer spatial transcriptomics by developing the three graph regularized non-negative matrix factorization (TGR-NMF).
View Article and Find Full Text PDFAquaculture is one of the world's fastest-growing sectors in food production but with multiple challenges related to animal handling and infections. The disease caused by infectious salmon anemia virus (ISAV) leads to outbreaks of local epidemics, reducing animal welfare, and causing significant economic losses. The composition of feed has shifted from marine ingredients such as fish oil and fish meal towards a more plant-based diet causing reduced levels of eicosapentaenoic acid (EPA).
View Article and Find Full Text PDFBMC Med Genomics
January 2025
Administrative Office, The Fourth People's Hospital of Nanning, Nanning, China.
Background: Chronic obstructive pulmonary disease (COPD) is a chronic and progressive lung disease. Disulfidptosis-related genes (DRGs) may be involved in the pathogenesis of COPD. From the perspective of predictive, preventive, and personalized medicine (PPPM), clarifying the role of disulfidptosis in the development of COPD could provide a opportunity for primary prediction, targeted prevention, and personalized treatment of the disease.
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