A new pentaplex PCR system for forensic casework analysis.

Int J Legal Med

Institute for Forensic Medicine, University Erlangen-Nürnberg, Universitätsstrasse 22, 91054 Erlangen, Germany.

Published: March 2001

In 1998 the Federal Criminal Police Office of Germany (BKA) established a central genetic database of offenders and suspects to facilitate comparisons with biological samples from future criminal offences. The five obligatory short tandem repeat (STR) loci in this database (TH01, SE33, vWA, FGA and D21S11) were co-amplified in a new PCR pentaplex analysing system together with the sex-specific locus amelogenin. Due to overlapping fragment sizes, amplification products were fluorescent dye-labelled with different colours, separated by electrophoresis and detected directly using the ABI PRISM 310 Genetic Analyzer. Reproducible and reliable results were obtained from as low as 125 pg template DNA, indicating high specificity and sensitivity of the assay. Environmental studies and enzymatic digest with DNase I revealed an excellent stability of the pentaplex system with typeable results even in cases of partially degraded DNA. Complete and reproducible DNA typing was possible in blood-stain mixtures with the minor component as low as 10%. Mean stutter peak intensities were analysed for all loci and ranged from 2.7 +/- 0.8% (TH01) to 10.6 +/- 1.6% (vWA) of the main signal intensity. Allele frequencies were determined in a North Bavarian population sample (n = 121). The combination of five systems resulted in a mean exclusion chance of 99.86% and a power of discrimination of 99.999996%. No deviation from Hardy-Weinberg equilibrium could be found.

Download full-text PDF

Source
http://dx.doi.org/10.1007/s004140000161DOI Listing

Publication Analysis

Top Keywords

pentaplex pcr
4
pcr system
4
system forensic
4
forensic casework
4
casework analysis
4
analysis 1998
4
1998 federal
4
federal criminal
4
criminal police
4
police office
4

Similar Publications

Article Synopsis
  • Mismatch repair deficiency (dMMR) and microsatellite instability (MSI) are important genetic markers in various cancers, especially gastrointestinal and endometrial types, and can indicate responsiveness to immune checkpoint inhibitors (ICIs).
  • In a study involving 1,306 cancer cases, dMMR was determined through immunohistochemistry (IHC) testing for specific proteins, while MSI was assessed using pentaplex PCR, revealing an overall MSI-high incidence of 12.1% compared to a dMMR incidence of 20.3%.
  • A significant discrepancy of 19.3% was found between dMMR and MSI results, particularly noted with a 60.9% discrepancy in
View Article and Find Full Text PDF

Background: There is a high diversity of beta-lactamases in gram negative pathogens, making them difficult to treat. In the presence of OXA-1 and ampC, PTZ is no longer clinically relevant when treating Enterobacterales expressing ESBLs. Further, MBL infections are often treated with the combination of ceftazidime/avibactam with aztreonam.

View Article and Find Full Text PDF

Background: The tumor-agnostic indication of immune checkpoint inhibitors to treat cancers with mismatch repair deficiency (dMMR)/microsatellite instability (MSI) increased the demand for such tests beyond Lynch syndrome. International guideline recommendations accept immunohistochemistry (IHC) for dMMR or molecular techniques (PCR or NGS) for MSI status determinations considering the two tests are equal, although there are scattered reports contradicting to this presumption.

Materials And Methods: Here we have directly compared four protein MMR immunohistochemistry (IHC) to MSI Pentaplex PCR test in a large cancer patient cohort (n = 1306) of our diagnostic center where the two tests have been run parallel in 703 cases.

View Article and Find Full Text PDF

The detection of microsatellite instability (MSI) and mismatch repair (MMR) deficiency has become mandatory for most tumors in recent years, owing to the development of immune checkpoint inhibitors as a highly effective therapy for MMR deficiency/MSI tumors. The timely and efficient detection of MSI is valuable, and new methods are increasingly being developed. To date, MMR assessment has been performed using immunohistochemistry of the 4 MMR proteins and/or microsatellite stability/MSI using PCR, mostly using the pentaplex panel.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates the link between sebaceous neoplasms (SNs) and Muir-Torre syndrome (MTS), aiming to find the best methods for early detection of associated internal cancers.
  • It involves 107 patients and employs immunohistochemistry (IHC) and molecular biology techniques to assess the presence of deficient mismatch repair (dMMR) in these tumors, alongside calculating a Mayo Clinic risk score for MTS.
  • Findings suggest that using the Mayo Clinic risk score as a first step, followed by IHC testing, offers the most effective and cost-efficient approach to screen for MTS in patients with SNs.
View Article and Find Full Text PDF

Want AI Summaries of new PubMed Abstracts delivered to your In-box?

Enter search terms and have AI summaries delivered each week - change queries or unsubscribe any time!