Publications by authors named "Zuzana Zemanova"

Article Synopsis
  • Glioblastoma is the most common and aggressive primary brain tumor, making diagnosis difficult due to its genetic variability and poor prognosis.
  • A complex case study utilized multiple cytogenomic methods to identify key genetic markers, revealing classical glioblastoma characteristics and distinct pathological clones.
  • The study suggests an integrated approach for diagnosis, focusing on detecting genetic alterations to potentially improve patient outcomes in terms of diagnosis, prognosis, and treatment predictions.
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Background: Luspatercept, an inhibitor of the transforming growth factor beta (TGF-β) pathway, is a novel treatment for anemic patients with lower-risk myelodysplastic syndromes (MDS) with transfusion dependence (TD) who do not respond to erythropoiesis-stimulating agents (ESA) therapy or are not suitable candidates for this treatment. We present real-world experience with luspatercept therapy from two hematology centers in the Czech Republic.

Methods: By January 2024, 54 MDS patients (33 men, 21 women) with a median age of 74 years (range, 55-95) were treated with luspatercept ± ESA at two Charles University hematology centers in Prague and Hradec Králové.

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Cell cycle checkpoints, oncogene-induced senescence and programmed cell death represent intrinsic barriers to tumorigenesis. Protein phosphatase magnesium-dependent 1 (PPM1D) is a negative regulator of the tumour suppressor p53 and has been implicated in termination of the DNA damage response. Here, we addressed the consequences of increased PPM1D activity resulting from the gain-of-function truncating mutations in exon 6 of the PPM1D.

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  • Mantle cell lymphoma (MCL) shows recurring genetic changes in key regulators of the phosphoinositol-3-kinase (PI3K) pathway, particularly involving PIK3CA amplifications and PTEN losses.
  • In vitro studies using modified MCL cell lines revealed that PIK3CA overexpression reduces reliance on B-cell receptor (BCR) signaling, alters metabolic processes, and leads to therapy resistance without affecting AKT signaling.
  • Conversely, PTEN knockout resulted in notable changes, including heightened AKT activation, greater resistance to various inhibitors, and decreased reliance on BCR signaling, indicating how these genetic alterations may promote therapy resistance and adaptive survival mechanisms in MCL.
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Background: T-cell acute lymphoblastic leukemia (T-ALL) represents a rare and clinically and genetically heterogeneous disease that constitutes 10-15% of newly diagnosed pediatric ALL cases. Despite improved outcomes of these children, the survival rate after relapse is extremely poor. Moreover, the survivors must also endure the acute and long-term effects of intensive therapy.

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Objectives: To evaluate the efficacy and tolerability of a single dose of oral cefixime 800 mg plus oral doxycycline 100 mg twice a day for 7 days, compared with a recommended single dose of ceftriaxone plus single dose of oral azithromycin, for treatment of uncomplicated urogenital, rectal, or pharyngeal gonorrhoea.

Methods: A noninferiority, open-label, multicentre randomized controlled trial was conducted in Prague, Czech Republic. Some 161 patients, 18-65 years of age diagnosed with uncomplicated urogenital, rectal, or pharyngeal gonorrhoea by nucleic acid amplification test (NAAT) were randomized to treatment with single dose of cefixime 800 mg plus doxycycline 100 mg twice a day for 1 week or a single dose of ceftriaxone 1 g intramuscularly plus single dose of azithromycin 2 g.

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Article Synopsis
  • The GA trial has been registered with the EudraCT number 2013-001639-38, which is a database for clinical trials in Europe.
  • This registration indicates that the trial has been reviewed and approved by relevant regulatory authorities.
  • The identification number helps track the trial's progress and ensures transparency in the research process.
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The mechanisms by which myelodysplastic syndrome (MDS) cells resist the effects of hypomethylating agents (HMA) are currently the subject of intensive research. A better understanding of mechanisms by which the MDS cell becomes to tolerate HMA and progresses to acute myeloid leukemia (AML) requires the development of new cellular models. From MDS/AML cell lines we developed a model of 5-azacytidine (AZA) resistance whose stability was validated by a transplantation approach into immunocompromised mice.

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  • Fibroblast activation protein (FAP) is often found in tumors, particularly glioblastomas, and contributes to a supportive environment for tumor growth, often located near activated blood vessel cells.
  • FAP mesenchymal cells in glioblastomas do not initiate tumors themselves but can enhance blood vessel formation (angiogenesis) and assist in the movement and growth of glioma cells through signaling mechanisms.
  • The study indicates that FAP mesenchymal cells have a distinct profile of signaling factors that promote angiogenesis and may aid in the worsening of glioblastoma progression, making them a potential target for therapies.
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Mantle cell lymphoma (MCL) is a subtype of B-cell lymphoma with a large number of recurrent cytogenetic/molecular aberrations. Approximately 5-10% of patients do not respond to frontline immunochemotherapy. Despite many useful prognostic indexes, a reliable marker of chemoresistance is not available.

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The karyotype of bone-marrow cells at the time of diagnosis is one of the most important prognostic factors in patients with myelodysplastic syndromes (MDS). In some cases, the acquisition of additional genetic aberrations (clonal evolution [CE]) associated with clinical progression may occur during the disease. We analyzed a cohort of 469 MDS patients using a combination of molecular cytogenomic methods to identify cryptic aberrations and to assess their potential role in CE.

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Mutations in the Sterile alpha motif domain containing 9 () gene have been described in patients with severe multisystem disorder, MIRAGE syndrome, but also in patients with bone marrow (BM) failure in the absence of other systemic symptoms. The role of hematopoietic stem cell transplantation (HSCT) in the management of the disease is still unclear. Here, we present a patient with a novel mutation in (c.

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In patients with hematological malignancies one of the most substantial findings is the karyotype of bone marrow cells at the time of diagnosis. The detection of clonal chromosome aberrations in diagnostic samples not only confirms a neoplastic or premalignant process but also provides important diagnostic and prognostic information essential for precise disease classification and choice of suitable therapy. Karyotype analysis during the disease course also allows monitoring of the treatment success reflected as well in the revised WHO classification where patients are often classified into the different diagnostic subtypes based on the finding of specific chromosome and/or genetic changes.

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Article Synopsis
  • Mantle cell lymphoma (MCL) is an aggressive B-cell cancer where BCL2 is overexpressed; the drug venetoclax targets BCL2 but resistance can occur in MCL cells.
  • Key proteins BIM and NOXA are crucial for venetoclax-induced cell death, yet they are expressed differently in cancer cell lines compared to primary cells, with NOXA being overexpressed in MCL cell lines.
  • Combining venetoclax with the MCL1 inhibitor S63845 shows promise in overcoming resistance and may provide a new treatment approach for resistant MCL patients with adverse genetic profiles.
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  • A study of 233 children with ambiguous lineage leukemia (ALAL) aimed to define treatment strategies, as previous definitions had lacked clear therapy recommendations.
  • Results showed that acute lymphoblastic leukemia (ALL)-type treatments led to a significantly higher five-year event-free survival (EFS) rate (80%) compared to acute myeloid leukemia (AML)-type treatments (36%) and combined types (50%).
  • The findings recommend using ALL-type treatment for most pediatric ALAL patients, particularly those with CD19 leukemia, while AML-type treatment is advised for a minority, and transplantation shows no overall benefit except for certain poorly responding patients.
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Lenalidomide therapy represents meaningful progress in the treatment of anemic patients with myelodysplastic syndromes with del(5q). We present our initial lenalidomide experience and the positive effect of combining erythropoietin and steroids with lenalidomide in refractory and relapsed patients. We treated by lenalidomide 55 (42 female; 13 male; median age 69) chronically transfused lower risk MDS patients with del(5q) (45) and non-del(5q) (10).

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Article Synopsis
  • Dicentric chromosomes (DCs) are important indicators of cancer in various types of malignancies, but they can be missed in standard analysis methods like mFISH, particularly in complex karyotypes.* -
  • A study of 114 acute myeloid leukemia (AML) patients revealed that while conventional methods detected monosomies in 63% of cases, more detailed FISH analysis confirmed these findings in only 55%, uncovering a high frequency of DCs disguised as monosomies.* -
  • The presence of DCs, particularly from chromosomes 17 and 20, alongside chromosome loss and unbalanced translocations, suggests complex chromosomal behavior that contributes to the evolution of abnormal cells, which correlates with poorer prognosis
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Analyses at nucleotide resolution reveal unexpected complexity of seemingly simple and balanced chromosomal rearrangements. Chromothripsis is a rare complex aberration involving local shattering of one or more chromosomes and reassembly of the resulting DNA segments. This can influence gene expression and cause abnormal phenotypes.

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Azacitidine (AZA) for higher risk MDS patients is a standard therapy with limited durability. To monitor mutation dynamics during AZA therapy we utilized massive parallel sequencing of 54 genes previously associated with MDS/AML pathogenesis. Serial sampling before and during AZA therapy of 38 patients (reaching median overall survival 24 months (Mo) with 60% clinical responses) identified 116 somatic pathogenic variants with allele frequency (VAF) exceeding 5%.

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Background: The high incidence of mutations and cytogenetic abnormalities in patients with myelodysplastic syndrome (MDS) suggests that defects in DNA repair mechanisms. We monitored DNA repair pathways in MDS and their alterations during disease progression.

Methods: Expression profiling of DNA repair genes was performed on CD34+ cells, and paired samples were used for monitoring of RAD51 and XRCC2 gene expression during disease progression.

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