Publications by authors named "Zijian Ye"

Background: Breast cancer (BC) is the leading cancer among women globally, which has the highest incidence and mortality rate in over a hundred countries. This study was intended to discover a new prognostic biomarker, facilitating personalized treatment approaches.

Methods: RNA sequencing data from The Cancer Genome Atlas database and Gene Expression Omnibus database were utilized to download to evaluate expression levels and prognostic significance of Keratin 14 (KRT14).

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Traditional underwater polarization imaging methods can only provide clear degree of polarization (DOP) and intensity images of the object but cannot provide images of the polarization state of the object. This paper proposes a method to extract clear object information from turbid water in all four Stokes parameter (I, Q, U, and V) channels by using the full Stokes camera, enabling clear polarization state image reconstruction. The method utilizes multiple images from different angles to construct a low-rank and sparse matrix.

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Apoptotic protease activating factor 1 (Apaf-1) was traditionally defined as a scaffold protein in mammalian cells for assembling a caspase activation platform known as the 'apoptosome' after its binding to cytochrome c. Although Apaf-1 structurally resembles animal NOD-like receptor (NLR) and plant resistance (R) proteins, whether it is directly involved in innate immunity is still largely unknown. Here, we found that Apaf-1-like molecules from lancelets, fruit flies, mice, and humans have conserved DNA sensing functionality.

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The high incidence of skin wounds (e.g., burns, diabetic ulcers, venous ulcers, pressure sores, and radiation injuries) remains a significant challenge in clinical settings.

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Background: Addressing prosthetic joint infections poses a significant challenge within orthopedic surgery, marked by elevated morbidity and mortality rates. The presence of biofilms and infections attributed to () further complicates the scenario.

Objective: To investigate the potential of radioimmunotherapy as an innovative intervention to tackle biofilm-associated infections.

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The development of biomass-based eco-friendly aerogel with superior flame retardancy, thermal insulation, and mechanical properties at the same time has long been a tough challenge. In this study, the polysaccharide-based aerogels composed of konjac glucomannan, sodium alginate, and supramolecular assembled melamine phytate (MPA) nanosheets were successfully fabricated through the freeze-drying method. Owing to the excellent charcoal-forming and non-combustible gas-releasing effect of MPA nanosheets, the thermal stability and flame retardancy properties of the aerogels were both significantly enhanced, with the highest limiting oxygen index value reaching 42.

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Article Synopsis
  • Bacterial infections and antimicrobial resistance are major challenges for global healthcare, revealing limitations in traditional diagnostic and treatment methods and emphasizing the need for new approaches.
  • Aptamers are synthetic oligonucleotides that show promise in managing bacterial infections by providing high specificity and effectiveness in both diagnosis and therapy, including early detection and suppressing bacterial growth.
  • The review highlights how aptamers can also improve immune responses and serve in advanced treatment methods while discussing potential challenges like stability and degradation, aiming to expand their clinical applications.
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  • Dendritic cells (DCs) are essential for regulating immune responses in tumors, especially in clear-cell renal-cell carcinoma (ccRCC), but current research has gaps in understanding their role in immune activation.
  • The study identified key genes related to activated DCs using RNA-seq data and developed a prognostic model that includes five specific genes, validated using several external data sets.
  • This model not only predicts patient outcomes in advanced ccRCC but also shows associations with tumor progression and how patients might respond to therapies like the BET inhibitor JQ1.
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While immune checkpoint blockade (ICB) has shown promise for clinical cancer therapy, its efficacy has only been observed in a limited subset of patients and the underlying mechanisms regulating innate and acquired resistance to ICB of tumor cells remain poorly understood. Here, we identified ependymin-related protein 1 (EPDR1) as an important tumor-intrinsic regulator of PD-L1 expression and tumor immune evasion. Aberrant expression of EPDR1 in hepatocellular carcinoma is associated with immunosuppression.

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Article Synopsis
  • The tumor microenvironment (TME) significantly influences tumor behavior, and this study investigates how DNA methylation impacts TME in clear-cell renal cell carcinoma (ccRCC).
  • Researchers identified four key methylation-driven genes (TME-MDGs) through DNA methylation and RNA-seq analysis, confirming their downregulation in tumor samples.
  • The findings suggest these genes are linked to patient response to immunotherapy and targeted treatments like pazopanib, offering potential new targets for ccRCC therapies.
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Intramuscular fat (IMF) refers to the lipid stored in skeletal muscle tissue. The number and size of intramuscular adipocytes are the primary factors that regulate IMF content. Intramuscular adipocytes can be derived from either in situ or ectopic migration.

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Immune checkpoint blockade (ICB) has shown considerable promise for treating various malignancies, but only a subset of cancer patients benefit from immune checkpoint inhibitor therapy because of immune evasion and immune-related adverse events (irAEs). The mechanisms underlying how tumor cells regulate immune cell response remain largely unknown. Here we show that hexokinase domain component 1 (HKDC1) promotes tumor immune evasion in a CD8 T cell-dependent manner by activating STAT1/PD-L1 in tumor cells.

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High-quality conjugated microporous polymer (CMP) films with orientation and controlled structure are extremely desired for applications. Here, we report the effective construction of CMP 3D composite films (pZn/PTPCz) with a controlled porosity structure and preferred orientation using the template-assisted electropolymerization (EP) approach for the first time. The structure of pZn/PTPCz composite thin films and nitrophenol sensing performance were thoroughly studied.

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In this study, β-CD was used as a receptor to prepare three novel SDES, which were used to pretreat corn stalks for obtaining fluorescent lignin and promoting biomass pyrolytic saccharification. It was found that GA-residue had a high cellulose retention ratio (94.63%) and the highest lignin removal ratio (61.

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Objective: The aim of this study was to evaluate safety and efficacy of thoracic endovascular aortic repair (TEVAR) for acute Stanford type B aortic dissection (TBAD) with retrograde type A intramural hematoma (TAIMH).

Methods: Patients with acute TBAD with retrograde TAIMH treated with TEVAR between January 1, 2014, to March 31, 2022, were retrospectively reviewed. Aortic diameter and distance were measured using the 3D Slicer image computing platform.

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A well-established role of cyclic GMP-AMP synthase (cGAS) is the recognition of cytosolic DNA, which is linked to the activation of host defense programs against pathogens via stimulator of interferon genes (STING)-dependent innate immune response. Recent advance has also revealed that cGAS may be involved in several noninfectious contexts by localizing to subcellular compartments other than the cytosol. However, the subcellular localization and function of cGAS in different biological conditions is unclear; in particular, its role in cancer progression remains poorly understood.

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In this study, we investigated the integration between neuroscience and entrepreneurship. First, we explored the concept of neuroentrepreneurship and the investigation of neuroentrepreneurship using scientific research methods. Second, we constructed a road map for entrepreneurial researchers interested in conducting neuroentrepreneurship-related research.

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Mdfi, an inhibitor of myogenic regulatory factors, is involved in myoblast myogenic development and muscle fiber type transformation. However, the regulatory network of Mdfi regulating myoblasts has not been revealed. In this study, we performed microRNAs (miRNAs)-seq on Mdfi overexpression (Mdfi-OE) and wild-type (WT) C2C12 cells to establish the regulatory networks.

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Article Synopsis
  • Histone deacetylases (HDACs) are crucial in regulating gene expression, and their dysregulation can lead to cancer, making them important targets for treatment, although HDAC inhibitors alone have had limited success in solid tumors.
  • This study aimed to find a new downstream target of HDACs to improve combination therapy outcomes by analyzing breast cancer cells for gene responsiveness to HDAC inhibitors using various methods, including transcriptome sequencing and flow cytometry.
  • The research identified KDELR2 as a novel target of HDAC3, linking its expression to poor breast cancer prognosis and demonstrating that the HDAC3-KDELR2 pathway enhances cancer cell proliferation and tumor growth by stabilizing the centrosomal protein POC5.
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Muscle development requires myoblast differentiation and muscle fiber formation. Myod family inhibitor (Mdfi) inhibits myogenic regulatory factors in NIH3T3 cells, but how Mdfi regulates myoblast myogenic development is still unclear. In the present study, we constructed an Mdfi-overexpression (Mdfi-OE) C2C12 cell line by the CRISPR/Cas9 system and performed RNA-seq on Mdfi-OE and wild-type (WT) C2C12 cells.

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Skeletal muscle, a critical component of the mammalian body, is essential for normal body movement. miRNAs are well documented in gene post-transcription regulation in many biological processes, including muscle development and maintenance. miR-92b-3p, which is often associated with tumorigenesis, has never been explored in myoblast development.

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Background: Barbed suture is a novel type of suture introduced in different surgical specialties. Nevertheless, its effect in total knee replacement is still unclear in terms of wound complications and cost effectiveness. The purpose of the present work is to evaluate the safety and efficacy of bidirectional barbed suture in reducing postoperative wound complications in the patients undergoing total knee replacement.

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