Publications by authors named "ZiJian Zhang"

Non-small cell lung cancer (NSCLC) frequently metastasizes to the brain, significantly worsened prognoses. This study aimed to develop an interpretable model for predicting survival in NSCLC patients with brain metastases (BM) integrating radiomic features and RNA sequencing data. 292 samples are collected and analyzed utilizing T1/T2 MRIs.

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Terminal exhaustion is a critical barrier to antitumor immunity. By integrating and analyzing single-cell RNA-sequencing and single-cell assay for transposase-accessible chromatin with sequencing data, we found that ETS variant 7 (ETV7) is indispensable for determining CD8 T cell fate in tumors. ETV7 introduction drives T cell differentiation from memory to terminal exhaustion, limiting antiviral and antitumor efficacy in male mice.

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Multiple immune components in the complex and heterogeneous tumor-immune microenvironment (TIME) work cooperatively to promote or impede cancer immunotherapy. Synergistically co-managing multiple immune cells with single agents for advanced antitumor immunity remains desirable but challenging. This In Focus article introduces a triple orthogonal linker (T-Linker)-based multimodal targeting chimera (Multi-TAC) platform, enabling the single-agent-mediated tumor-targeted co-engagement of multiple immune cell types within TIME for potentiated immunotherapy.

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T cell-based immunotherapies have revolutionized cancer treatment, yet durable responses remain elusive. Here we show that PCIF1, an RNA N 2'-O-dimethyladenosine (mA) methyltransferase, negatively regulates CD8 T cell antitumor responses. Whole-body or T cell-specific Pcif1 knockout (KO) reduced tumor growth in mice.

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Accurate preoperative grading of prostate cancer is crucial for assisted diagnosis. Multi-parametric magnetic resonance imaging (MRI) is a commonly used non-invasive approach, however, the interpretation of MRI images is still subject to significant subjectivity due to variations in physicians' expertise and experience. To achieve accurate, non-invasive, and efficient grading of prostate cancer, this paper proposes a deep learning method that adaptively fuses dual-view MRI images.

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Periodontitis is a chronic inflammation of the periodontal support tissues. The typical symptoms of periodontitis are inflammation and alveolar bone resorption. Chitong Xiaoyanling Granules (CXG) is composed of 10 Chinese herbs, which have the efficacy of dispersing wind, clearing heat, cooling blood, and relieving pain.

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Article Synopsis
  • Pancreatitis significantly impacts society, but comprehensive data on its incidence, prevalence, mortality, and health inequalities is currently lacking, highlighting an important gap in research.
  • Analysis of global data from 1990 to 2019 shows a decrease in age-standardized rates (ASR) of pancreatitis-related issues, yet the actual number of cases is rising, particularly among males and in regions with low Social Development Index (SDI).
  • Future projections indicate a continuing increase in the number of pancreatitis cases, emphasizing the need for more focused research and public health strategies to address the growing burden of this disease.
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, a wild and endangered salt-secreting small shrub, is distributed in arid and semi-arid areas of Inner Mongolia, China. An H-pyrophosphatase gene () was isolated from . according to transcriptomic data, which encoded a plasma membrane and tonoplast-localized protein.

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  • - The study investigates how FLOT2, a protein associated with tumor growth, is regulated at the RNA level in nasopharyngeal carcinoma (NPC), focusing on the role of HNRNPH1 and its interaction with the m6A modification system.
  • - HNRNPH1 stabilizes FLOT2 mRNA through its interaction with METTL14, preventing degradation and leading to increased levels of FLOT2, which correlates with worse outcomes for NPC patients.
  • - Targeting the HNRNPH1 and METTL14 interaction could provide a new therapeutic strategy to hinder NPC progression by reducing FLOT2 expression.
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The tripartite motif (TRIM) protein family has been shown to play important roles in the occurrence and development of various tumors. However, the biological functions of TRIM47 and its regulatory mechanism in hepatocellular carcinoma (HCC) remain unexplored. Here, we showed that TRIM47 was upregulated in HCC tissues compared with adjacent normal tissues, especially at advanced stages, and associated with poor prognosis in HCC patients.

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Although immunotherapy has revolutionized cancer treatment, its efficacy is affected by multiple factors, particularly those derived from the complexity and heterogeneity of the tumor-immune microenvironment (TIME). Strategies that simultaneously and synergistically engage multiple immune cells in TIME remain highly desirable but challenging. Herein, we report a multimodal and programmable platform that enables the integration of multiple therapeutic modules into single agents for tumor-targeted co-engagement of multiple immune cells within TIME.

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Article Synopsis
  • Changes in structural-functional (SC-FC) coupling are associated with major depressive disorder (MDD), and a new analysis algorithm is promising for psychiatric research.
  • The study analyzed SC-FC coupling in gray matter of 114 MDD patients compared to 131 healthy controls, revealing that MDD patients had lower coupling in some brain regions and higher in others.
  • The results indicate that altered SC-FC coupling could play a role in MDD and is linked to visual memory problems, with specific correlations to illness duration and cognitive testing scores.
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Objectives: This study aims to unravel the mechanisms underlying M2 macrophage polarization in head and neck squamous cell carcinoma (HNSCC), and identify potential therapeutic targets.

Materials And Methods: We conducted an integrated bioinformatic analysis using HNSCC bulk transcriptomes from TCGA and GEO databases to pinpoint critical factors influencing M2 macrophage polarization and tumor prognosis. The significance of these genes was validated in function analysis, single-cell transcriptome datasets, and in vitro experiments.

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Leveraging the chemical data available in legacy formats such as publications and patents is a significant challenge for the community. Automated reaction mining offers a promising solution to unleash this knowledge into a learnable digital form and therefore help expedite materials and reaction discovery. However, existing reaction mining toolkits are limited to single input modalities (text or images) and cannot effectively integrate heterogeneous data that is scattered across text, tables, and figures.

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  • - The study aimed to identify risk factors for osteoporotic vertebral compression re-fractures (OVCRFs) in patients who underwent percutaneous kyphoplasty (PKP) between 2012 and 2020.
  • - A total of 1391 patients were analyzed, with 51 developing OVCRFs and 102 matched as controls. Key differences in fat infiltration ratios and other clinical metrics were noted between the two groups.
  • - Significant predictors for OVCRFs included lumbar fat distribution (particularly paravertebral muscle fat infiltration and subcutaneous fat thickness), bone mineral density, and alkaline phosphatase levels.
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  • Transposable elements (TEs) play a key role in genetic diversity and gene regulation, yet current methods for quantifying them in single-cell data often overlook accurate mapping to specific loci.
  • MATES is a new deep-learning tool that improves the allocation of multi-mapping reads to precise TE locations by leveraging adjacent read contexts, leading to better quantification.
  • This method enhances the ability to explore single-cell differences and gene regulation tied to TEs, making it a valuable resource for researchers in single-cell genomics.
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  • The study compared anterior segment parameters before and after cataract surgery in patients with acute primary angle closure (APAC) and their fellow eyes that were classified as primary angle closure suspects (PACS), using advanced imaging technology called AS-OCT.
  • Results showed that both APAC and PACS eyes had improvements in anterior chamber depth and volume after surgery, while some parameters like lens vault and iris contact decreased.
  • Overall, APAC eyes experienced a significant decrease in intraocular pressure and improvement in visual acuity, while PACS eyes showed notable improvements in vision as well, with better outcomes observed in the PACS group.
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Repulsive guidance molecule b (RGMb), a glycosylphosphatidylinositol-anchored member of the RGM family, is initially identified as a co-receptor of bone morphogenetic protein (BMP) in the nervous system. The expression of RGMb is transcriptionally regulated by dorsal root ganglion 11 (DRG11), which is a transcription factor expressed in embryonic DRG and dorsal horn neurons and plays an important role in the development of sensory circuits. RGMb is involved in important physiological processes such as embryonic development, immune response, intercellular adhesion and tumorigenesis.

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Objective: The aim of this study is to quantify anterior chamber parameters to provide potential risk indicators for evaluating the progression of primary angle-closure suspect (PACS) eyes to acute primary angle closure (APAC) and the degree of intraocular pressure elevation in patients with APAC utilizing anterior segment optical coherence tomography (AS-OCT).

Methods: Tomey CASIA2 AS-OCT was used to quantitatively measure various anterior chamber parameters, including anterior chamber depth (ACD), anterior chamber volume (ACV), lens thickness (LT), lens vault (LV), iris-trabecular contact index (ITC), iris thickness (IT), iris volume (IV), iris curvature (IC), iris area (IA), and iris thickness (IT), in APAC eyes (30 eyes) and contralateral PACS eyes (30 eyes) of 30 patients. The differences in these parameters between the two groups and their relationship with intraocular pressure were analyzed.

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Ribosomes are emerging as direct regulators of gene expression, with ribosome-associated proteins (RAPs) allowing ribosomes to modulate translation. Nevertheless, a lack of technologies to enrich RAPs across sample types has prevented systematic analysis of RAP identities, dynamics, and functions. We have developed a label-free methodology called RAPIDASH to enrich ribosomes and RAPs from any sample.

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Objective: The prognosis of recurrent cervical cancer tends to be poor and there are limited effective treatments currently available for these patients. This study was developed to find a safe and effective treatment for patients with central pelvic recurrent cervical cancer.

Materials And Methods: This retrospective study analyzed patients with central pelvic recurrent cervical cancer who received 3D-printed individual template (3D-PIT) brachytherapy between February 2019 and June 2023.

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A low water-solubility but hydrophilic coating of CaF is demonstrated to be effective in mitigating the susceptibility of nickel-rich cathodes to moisture and even water. The ability of the cathode to resist water erosion is not inherently linked to either hydrophobicity or hydrophilicity, but lies in robust chemical bonding within the protective layer exhibiting low water solubility.

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The Fukushima Daiichi Nuclear Power Plant accident released considerable radionuclides into the environment. Radioactive particles, composed mainly of SiO, emerged as distinctive features, revealing insights into the accident's dynamics. While studies extensively focused on high-volatile radionuclides like Cs, investigations into low-volatile nuclides such as Sr and Pu remain limited.

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Digital light processing (DLP) bioprinting, known for its high resolution and speed, enables the precise spatial arrangement of biomaterials and has become integral to advancing tissue engineering and regenerative medicine. Nevertheless, inherent light scattering presents significant challenges to the fidelity of the manufactured structures. Herein, we introduce a photoinhibition strategy based on Rutin nanoparticles (Rnps), attenuating the scattering effect through concurrent photoabsorption and free radical reaction.

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The morphology of the active layer is crucial for highly efficient organic solar cells (OSCs), which can be regulated by selecting a rational third component. In this work, the highly crystalline nonfullerene acceptor BTP-eC9 is selected as the morphology regulator in OSCs with PM6:BTP-BO-4Cl as the main system. The addition of BTP-eC9 can prolong the nucleation and crystallization progress of acceptor and donor molecules, thereby enhancing the order of molecular arrangement.

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