Publications by authors named "Zhisheng Ye"

Article Synopsis
  • The study investigates how retinal pigment epithelial (RPE) cells become active during proliferative vitreoretinopathy (PVR) after eye trauma, focusing on their rapid growth and changes.
  • By examining chromatin accessibility and histone modifications in mouse models, the researchers map the epigenetic changes that correspond with the activation of specific genes associated with PVR.
  • They identify potential treatments, including medications that inhibit enhancer activity and gene therapies, which could slow down PVR progression by targeting key molecular pathways.
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In longitudinal follow-up studies, panel count data arise from discrete observations on recurrent events. We investigate a more general situation where a partly interval-censored failure event is informative to recurrent events. The existing methods for the informative failure event are based on the latent variable model, which provides indirect interpretation for the effect of failure event.

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As one key technology of future radio communication networks, cognitive radio networks (CRNs) can effectively handle the shortage of network resources. Two classes of users exist in traditional CRNs, namely, primary users (PUs) with higher priority and secondary users (SUs) with cognitive ability. In CRNs, during the communication process, packets need to travel through various servers, such as switches and routers, and these devices may fail at any time.

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Large sample theory of semiparametric models based on maximum likelihood estimation (MLE) with shape constraint on the nonparametric component is well studied. Relatively less attention has been paid to the computational aspect of semiparametric MLE. The computation of semiparametric MLE based on existing approaches such as the expectation-maximization (EM) algorithm can be computationally prohibitive when the missing rate is high.

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Article Synopsis
  • The study examines how intestinal microbial communities change in patients with end-stage liver disease after they receive a liver transplant (LT).
  • It reveals significant differences in gut microbiota between patients before and after LT, as well as between these patients and healthy controls, highlighting the impact of liver disease on gut health.
  • Additionally, the research identifies specific microbial species whose abundance changes post-transplant and notes shifts in functional modules, indicating that LT profoundly influences gut microbiome composition and function.
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Epidermal homeostasis under normal and healing conditions are critical for the physical and functional maintenance of the skin barrier. It requires a proper balance between keratinocyte proliferation and differentiation under genetic and epigenetic regulations. Here we show that mice carrying a hypomorphic mutation of the histone methyltransferase Ash1l [(absent, small, or homeotic)-like (Drosophila)] develop epidermal hyperplasia and impaired epidermal stratification upon aging.

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Balancer chromosomes are important tools for a variety of genetic manipulations in lower model organisms, owing to their ability to suppress recombination. In mouse, however, such effort has not been accomplished, mostly due to the size of the chromosomes and the complexity of multiple step chromosomal engineering. We developed an effective and versatile cassette-shuttling selection (CASS) strategy involving only two selection markers to achieve the sequential production of multiple large inversions along the chromosome.

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