Publications by authors named "Zhiman Song"

Ribosomally synthesized and post-translationally modified peptides (RiPPs) are a fascinating group of natural products that exhibit diverse structural features and bioactivities. P450-catalyzed RiPPs stand out as a unique but underexplored family. Herein, we introduce a rule-based genome mining strategy that harnesses the intrinsic biosynthetic principles of RiPPs, including the co-occurrence and co-conservation of precursors and P450s and interactions between them, successfully facilitating the identification of diverse P450-catalyzed RiPPs.

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Article Synopsis
  • LAB produce bioactive metabolites that may help maintain microbiome health, but their full potential and role in the human microbiome are not well understood.
  • Research analyzed over 31,000 LAB genomes and identified over 130,000 gene clusters associated with secondary metabolites, revealing a variety of strain-specific and characteristic compounds.
  • Findings show that LAB-derived substances, particularly class II bacteriocins, are abundant in vaginal microbiomes and may play a protective role by regulating microbial communities, suggesting their significance in maintaining microbiome balance.
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Article Synopsis
  • Microbes produce secondary metabolites (SMs) that influence interactions between them, and while much is known about bacterial and eukaryotic SMs, archaeal SMs are less understood.
  • Researchers discovered two new lanthipeptides from a halophilic archaeon, with one (archalan α) showing anti-archaeal properties, marking it as the first identified lantibiotic and anti-archaeal SM from archaea.
  • This study highlights the potential of archaeal lanthipeptides in microbial interactions and encourages further research into archaeal chemical biology as a source of bioactive compounds.
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A novel symbiotic bacterium, designated strain XY-114, was isolated from the cerata of an marine invertebrate species collected in the South China Sea. Strain XY-114 was an aerobic, Gram-stain-negative, non-motile and short rod-shaped bacterium (0.5-0.

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Biofilms formed by methicillin-resistant (MRSA) are one of the contributing factors to recurrent nosocomial infection in humans. There is currently no specific treatment targeting on biofilms in clinical trials approved by FDA, and antibiotics remain the primary therapeutic strategy. In this study, two anthraquinone compounds isolated from a rare actinobacterial strain R62, 3,8-dihydroxy-l-methylanthraquinon-2-carboxylic acid () and 3,6,8-trihydroxy-1-methylanthraquinone-2-carboxylic acid (), together with their 10 commercial analogs - were evaluated for antibacterial and antibiofilm activities against MRSA, which led to the discovery of two potential antibiofilm anthraquinone compounds anthraquinone-2-carboxlic acid () and rhein ().

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An aerobic, Gram-stain-negative, rod-shaped and non-motile strain (XY-359) was isolated from the mouth of a marine invertebrate species from the South China Sea. It grew at pH 6.0-8.

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Pathogenic bacterial biofilms play an important role in recurrent nosocomial and medical device-related infections. Once occurred, the complex structure of the biofilm promotes the development of antibiotic resistance and becomes extremely difficult to eradicate. Here we describe a novel and effective anti-biofilm compound maipomycin A (MaiA), which was isolated from the metabolites of a rare actinomycete strain XY-R10.

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Strain XY-J91, a Gram-stain-negative, reddish orange, non-spore-forming and short-rod-shaped marine bacterium, was isolated from rhizosphere soil of the mangrove plant (L.) Druce in Mai Po Nature Reserve, Hong Kong. The strain showed growth at 15-50 °C (optimum 40 °C), at pH 5.

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A novel bacterial strain, XY-99, was isolated from the epidermis of a marine invertebrate of the genus from seawater of the South China Sea. The cells of the strain were aerobic, Gram-stain-negative, non-motile, and oval-shaped (0.8-1.

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Rare Actinobacteria, known as non-Streptomyces, hold great potential to produce new bioactive compounds for drug development. A strain designated DSW09, which belongs those rare Actinobacteria, was isolated from surface seawater of the East China Sea. The cells were aerobic, Gram-positive, non-motile, non-spore-forming and rod-shaped (0.

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A Gram-stain-negative, non-flagellated, short rod-shaped bacterium, designated XY-R6, was isolated from the rhizosphere soil of a mangrove plant, Kandelia candel (L.) Druce, in Mai Po Nature Reserve, Hong Kong. Growth of strain XY-R6 was observed at pH 5.

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