Publications by authors named "Zhi-Pei Liu"

Article Synopsis
  • A newly isolated bacterium, strain 2021, from contaminated soil has shown the capability to degrade fluorene while being highly resistant to arsenic.
  • Strain 2021 demonstrated optimal performance in degrading fluorene in the presence of arsenic, suggesting that arsenic may actually promote its growth and degradation abilities.
  • The study highlights the genetic responses involved in arsenic resistance and hydrocarbon degradation, indicating the potential of strain 2021 in bioremediation of environments impacted by arsenic and polycyclic aromatic hydrocarbons.
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Sulfonamide antibiotics (SAs) are serious pollutants to ecosystems and environments. Previous studies showed that microbial degradation of SAs such as sulfamethoxazole (SMX) proceeds via a sad-encoded oxidative pathway, while the sulfonamide-resistant dihydropteroate synthase gene, sul, is responsible for SA resistance. However, the co-occurrence of sad and sul genes, as well as how the sul gene affects SMX degradation, was not explored.

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Nitrogen (N) gas in the atmosphere is partially replenished by microbial denitrification of ammonia. Recent study has shown that Alcaligenes ammonioxydans oxidizes ammonia to dinitrogen via a process featuring the intermediate hydroxylamine, termed "Dirammox" (direct ammonia oxidation). However, the unique biochemistry of this process remains unknown.

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Antagonism is a common behavior seen between microbes in nature. HO-1 converts ammonia to nitrogen under aerobic conditions, which leads to the accumulation of extracellular hydroxylamine (HA), providing pronounced growth advantages against many bacterial genera, including V4. In contrast, a mutant variant of , strain 2-29, that cannot produce HA fails to antagonize other bacteria.

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Article Synopsis
  • 3-amino-5-methyl-isoxazole (3A5MI) is a harmful byproduct from the breakdown of the antibiotic sulfamethoxazole, posing significant environmental risks due to its persistence.
  • A bacterial strain, designated sp. N39, was isolated in this study, capable of utilizing 3A5MI as its only source of carbon, nitrogen, and energy, making it a potential solution for its degradation.
  • Factors such as concentration, temperature, pH, and oxygen levels were tested for their effects on N39's degradation abilities, but the strain loses this capability over time, possibly due to genetic changes, indicating the need for further research on microbial degradation mechanisms and environmental impacts.
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Nitrogen cycle is an essential process for environmental health. Dirammox (ect onia idation), encoded by the cluster, was a novel pathway for microbial N production defined in HO-1. Here, a copy of the cluster as a whole was proved to have existed and very conserved in all genomes.

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Two Gram-stain-negative, aerobic, non-motile and rod-shaped bacterial strains designated 3A5MI-3 and RSS-23 were isolated from the Dragon-shaped Wetland System in Beijing Olympic Park, PR China. Strain 3A5MI-3 grew at 15–45 °C, pH 5.0–9.

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Amoxicillin (AMX), one of the micro-amount hazardous pollutants, was frequently detected in environments, and of great risks to environments and human health. Microbial degradation is a promising method to eliminate pollutants. In this study, an efficient AMX-degrading strain, Ads-6, was isolated and characterized.

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Article Synopsis
  • Ammonia oxidation is crucial for the nitrogen cycle and engineered ecosystems, with a new pathway called Dirammox recently identified.
  • The study focused on Alcaligenes faecalis strain JQ135, which converts ammonia to nitrous oxide (N) independently of denitrification processes, revealing its genetic regulation.
  • It confirmed that Dirammox is present in various bacteria beyond previously known species, and the regulation involves the MocR-family transcriptional regulator DnfR.
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Article Synopsis
  • Biological foaming in wastewater treatment plants (WWTPs) is primarily caused by the growth of filamentous bulking and foaming bacteria (BFB), which has raised concerns about sludge separation issues.
  • Although research has identified certain foaming bacteria, like Skermania piniformis, there is still a need to understand the wide variety of microbes involved and their roles in foaming.
  • In this study at the Qinghe WWTP in China, a new bacterium called Kaistella beijingensis was isolated and characterized, revealing its ability to produce hydrophobic surfaces and extracellular polymeric substances, contributing to the foaming problem in activated sludge.
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Heterotrophic nitrifiers are able to oxidize and remove ammonia from nitrogen-rich wastewaters but the genetic elements of heterotrophic ammonia oxidation are poorly understood. Here, we isolated and identified a novel heterotrophic nitrifier, Alcaligenes ammonioxydans sp. nov.

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Background: Phaffia rhodozyma has many desirable properties for astaxanthin production, including rapid heterotrophic metabolism and high cell densities in fermenter culture. The low optimal temperature range (17-21 °C) for cell growth and astaxanthin synthesis in this species presents an obstacle to efficient industrial-scale astaxanthin production. The inhibition mechanism of cell growth at > 21 °C in P.

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Nowadays, contamination by polycyclic aromatic hydrocarbons (PAHs) has become a serious problem all over the world; in particular, high-molecular-weight PAHs (HWM PAHs, four to seven rings) are more harmful to human health and environment due to their more complex structure and metabolic pathway. Biodegradation of PAHs with six or more rings, such as indeno[1,2,3-cd]pyrene (IcdP), was rarely described. An IcdP-degrading strain, IcdP1, was isolated from HWM PAH-contaminated soil.

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Increasing evidence shows that Curcumin (Cur) has a protective effect against cardiovascular diseases. However, the role of Cur in the electrophysiology of cardiomyocytes is currently not entirely understood. Therefore, the present study was conducted to investigate the effects of Cur on the action potential and transmembrane ion currents in rabbit ventricular myocytes to explore its antiarrhythmic property.

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Eleutheroside B (EB) is the main active constituent derived from the Chinese herb Acanthopanax senticosus (AS) that has been reported to possess cardioprotective effects. In this study we investigated the effects of EB on cardiac electrophysiology and its suppression on atrial fibrillation (AF). Whole-cell recording was conducted in isolated rabbit atrial myocytes.

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Nitrate accumulation causes long-time threat to aquatic animals in recirculating aquaculture system (RAS); thus, nitrate removal is also required in RASs. However, the lack of carbon sources makes denitrification difficult to function. Nitrate removal performance of an aerobic denitrifying and extracellular polyhydroxyalkanoate depolymerase-producing bacterium, Pseudomonas sp.

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Microorganisms in wastewater treatment plants (WWTPs) play a key role in the removal of pollutants from municipal and industrial wastewaters. A recent study estimated that activated sludge from global municipal WWTPs harbors 1 × 10 to 2 × 10 microbial species, the majority of which have not yet been cultivated, and 28 core taxa were identified as "most-wanted" ones (L. Wu, D.

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Article Synopsis
  • A new bacterium, known as strain GL14, was discovered in a lab bioreactor and is characterized as a nitrite-tolerant denitrifier belonging to the genus Pseudomonas.
  • It has a high genetic similarity with other Pseudomonas species, specifically Pseudomonas xanthomarina, and exhibits unique DNA characteristics that differentiate it from known species.
  • Based on comprehensive analyses including phylogenetic, genomic, and biochemical studies, strain GL14 is proposed as a new species named Pseudomonas nitrititolerans, with the type strain designated as GL14.
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Complex chemosensory systems control multiple biological functions in bacteria, such as chemotaxis, gene regulation, and cell cycle progression. Many species contain more than one chemosensory system per genome, but little is known about their potential interplay. In this study, we reveal cross talk between two chemosensory pathways that modulate chemotaxis and biofilm formation in We demonstrate that some chemoreceptors that govern chemotaxis also contribute to biofilm formation and these chemoreceptors can physically interact with components of both pathways.

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An efficient heterotrophic nitrifying/aerobic denitrifying strain, Photobacterium sp. NNA4 was isolated from a recirculating aquaculture system (RAS). NNA4 was capable of utilizing ammonia, nitrate or nitrite as sole N-source with maximal removal rates of 12.

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Bacterial community dynamics of the ANAMMOX reactor of an integrated "UASB + SHARON + ANAMMOX" system for treating piggery wastewater were investigated using the Illumina MiSeq method with samples obtained at ~ 2-week intervals during a 314-day period. With aerobic activated sludge as seeds and low content artificial wastewater (NH-N 50 mg/L; NO-N 55 mg/L) as influent for the ANAMMOX reactor, nitrogen removal was initially observed on day 38 with a removal rate 1.3 mg N L day, and increased to 90.

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In order to study the degradation of polycyclic aromatic hydrocarbons (PAHs) in an aged and highly contaminated soil, four bioremediation strategies (indigenous microorganisms, microbial bioaugmentation with a PAH-degrading and bioemulsifier-producing strain, Rhodococcus ruber Em1, plant bioaugmentation with Orychophragmus violaceus and their combination) were compared and the enhanced degradation mechanism was investigated in soil mesocosms. Degradation rates over a period of 175 days showed that Em1 combined with Orychophragmus violaceus promoted a significant enhancement of PAHs degradation. In inoculated microcosms with Rhodococcus ruberEm1, mineralization reached a lower level in the absence than in the presence of plants.

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Barbaloin (10-β-D-glucopyranosyl-1,8-dihydroxy-3-(hydroxymethyl)-9(10H)-anthracenone) is extracted from the aloe plant and has been reported to have anti-inflammatory, antitumor, antibacterial, and other biological activities. Here, we investigated the effects of barbaloin on cardiac electrophysiology, which has not been reported thus far. Cardiac action potentials (APs) and ionic currents were recorded in isolated rabbit ventricular myocytes using whole-cell patch-clamp technique.

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Vibriosis is a major epizootic disease that impacts free-living and farmed fish species worldwide. Use of probiotics is a promising approach for prevention of Vibrio infections in aquaculture. A probiotic anti-Vibrio strain, Bacillus pumilus H2, was characterized, and the mechanism of its effect was investigated.

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Article Synopsis
  • The bacterium Aeromonas salmonicida causes furunculosis in fish, leading to high mortality rates, and probiotics like Bacillus velezensis V4 may help prevent this disease in aquaculture.
  • Bacillus velezensis V4 produces anti-A. salmonicida compounds such as iturin, macrolactin, and difficidin, which inhibit the bacteria by disrupting its cell membrane and causing cell lysis.
  • Adding V4 to the diet of rainbow trout (Oncorhynchus mykiss) significantly reduced mortality rates and improved growth performance, indicating its potential as an effective probiotic in aquaculture.
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