Publications by authors named "Zhaoe Pan"

Fiber elongation rate is an essential characteristic of cotton fiber in the textile industry, yet it has been largely overlooked in genetic studies. Gibberellins (GAs) and auxin (IAA) are recognized for their role in directing numerous developmental processes in plants by influencing cell differentiation and elongation. However, the degree to which GA-IAA interaction governs cellular elongation in cotton fiber cells remains to be fully understood.

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Optimal plant height is crucial in modern agriculture, influencing lodging resistance and facilitating mechanized crop production. Upland cotton (Gossypium hirsutum) is the most important fiber crop globally; however, the genetic basis underlying plant height remains largely unexplored. In this study, we conducted a genome-wide association study to identify a major locus controlling plant height (PH1) in upland cotton.

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Strigolactones (SLs) represent a new group of phytohormones that play a pivotal role in the regulation of plant shoot branching and the development of adventitious roots. In cotton (, ), SLs play a crucial role in the regulation of fiber cell elongation and secondary cell wall thickness. However, the underlying molecular mechanisms of SL signaling involved in fiber cell development are largely unknown.

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Article Synopsis
  • The study investigates the genetic factors that affect flowering timing in wild cotton, focusing on the differences between early- and late-flowering Gossypium hirsutum genotypes.
  • Comparative transcriptomic profiling revealed that genes associated with flowering, especially those in the florigen pathways like FLOWERING LOCUS T (FT), are expressed differently between genotypes, with higher expression in the early-flowering variety ZMS.
  • Misregulation of circadian clock and light signaling genes contributes to the delayed flowering in the photoperiod-sensitive landrace GhP, highlighting potential targets for improving cotton breeding programs through altered flowering time.
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Cotton fiber holds immense importance as the primary raw material for the textile industry. Consequently, comprehending the regulatory mechanisms governing fiber development is pivotal for enhancing fiber quality. Our study aimed to construct a regulatory network of competing endogenous RNAs (ceRNAs) and assess the impact of non-coding RNAs on gene expression throughout fiber development.

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Article Synopsis
  • A major gene controlling primary root length (PRL) in cotton (Gossypium arboreum) has been identified, which is crucial for understanding root development in the plant.
  • A genome-wide association study analyzed 215 cotton accessions, revealing 49 significant SNPs linked to 32 candidate genes, with the strongest SNP (Chr07_8047530) distinguishing between different PRL haplotypes.
  • The gene GamurG emerged as a key regulator of PRL, showing higher expression in longer PRL genotypes, and manipulations of this gene affected root length in both cotton and Arabidopsis, suggesting its potential in improving cotton breeding efforts.
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Plants experience diverse abiotic stresses, encompassing low or high temperature, drought, water logging and salinity. The challenge of maintaining worldwide crop cultivation and food sustenance becomes particularly serious due to drought and salinity stress. Sustainable agriculture has significant promise with the use of nano-biotechnology.

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Article Synopsis
  • Plants can get better at handling stress, like salt, by a process called priming.
  • Researchers looked at different types of cotton plants to see how they react to salt stress and found some shared genes that help them resist it.
  • One important gene, XTH6, when silenced, can actually help the plants grow better even when there's salt stress.
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Plants are frequently subjected to a range of environmental stresses, including drought, salinity, cold, pathogens, and herbivore attacks. To survive in such conditions, plants have evolved a novel adaptive mechanism known as 'stress memory'. The formation of stress memories necessitates coordinated responses at the cellular, genetic/genomic, and epigenetic levels, involving altered physiological responses, gene activation, hyper-induction and chromatin modification.

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The Gossypium is a model genus for understanding polyploidy and the evolutionary pattern of inheritance. This study aimed to investigate the characteristics of SCPLs in different cotton species and their role in fiber development. A total of 891 genes from one typical monocot and ten dicot species were naturally divided into three classes based on phylogenetic analysis.

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Article Synopsis
  • Defoliation via defoliants improves cotton harvesting efficiency and raw cotton quality, yet the genetic basis and variations in leaf abscission are not fully understood.
  • The study aimed to investigate phenotypic variations in cotton leaf abscission, identify genetic loci related to defoliation, and assess the impact of these genetic factors on environmental adaptability.
  • Results showed significant phenotypic variations, discovery of key SNPs, and the identification of important genes linked to defoliation, with findings indicating improved sensitivity to defoliants through specific genetic combinations.
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Background: ORP (Oxysterol-binding protein-related proteins) genes play a role in lipid metabolism, vesicular transferring and signaling, and non-vesicular sterol transport. However, no systematic identification and analysis of ORP genes have been reported in cotton.

Result: In this study, we identified 14, 14, 7, and 7 ORP genes in G.

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Cotton is an important natural fiber crop; its seeds are the main oil source. Abiotic stresses cause a significant decline in its production. The WUSCHEL-related Homeobox (WOX) genes have been involved in plant growth, development, and stress responses.

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Growth-regulating factors-interacting factors (GIFs) are a type of transcription co-activators in plants, playing crucial roles in plants' growth, development, and stress adaptation. Here, a total of 35 genes were identified and clustered into two groups by phylogenetic analysis in four cotton genus. The gene structure and conserved domain analysis proved the conservative characteristics of genes in cotton.

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Leaves are important organs for crop photosynthesis and transpiration, and their morphological characteristics can directly reflect the growth state of plants. Accurate measurement of leaf traits and mining molecular markers are of great significance to the study of cotton growth. Here, we performed a Genome-wide association study on 7 leaf traits in 213 Asian cotton accessions.

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Brown cotton fiber (BCF) is a unique raw material of naturally colored cotton (NCC). But characteristics of the regulatory gene network and metabolic components related to the proanthocyanidins biosynthesis pathway at various stages of its fiber development remain unclear. Here, the dynamic changes in proanthocyanidins biosynthesis components and transcripts in the BCF variety "Zong 1-61" and its white near-isogenic lines (NILs) "RT" were characterized at five fiber developmental stages (0, 5, 10, 15, and 20 days post-anthesis; DPA).

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Foundation parents play a critical role in the genetic constituents of the derived genotypes. Deltapine-15 (DLP-15), introduced to China in 1950, is one of the most commonly used parents for early breeding programs in China. However, the formation and inheritance patterns of genomic constituents have not been studied.

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Background: Seedling stage plant biomass is usually used as an auxiliary trait to study plant growth and development or stress adversities. However, few molecular markers and candidate genes of seedling biomass-related traits were found in cotton.

Result: Here, we collected 215 Gossypium arboreum accessions, and investigated 11 seedling biomass-related traits including the fresh weight, dry weight, water content, and root shoot ratio.

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Article Synopsis
  • Cultivated cottons are a key economic crop providing natural fibers for textiles, and recent genomic research has made progress in understanding their genetic traits.
  • To support cotton researchers, the Cotton Genomic Variation Database (CottonGVD) has been created, showcasing genomic information, population variations, and visual results from genome-wide association studies (GWAS).
  • The database includes useful tools and interactive maps for easily accessing and analyzing genetic data, with plans for continual updates to expand its features.
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The study of A-genome Asian cotton as a potential fiber donor in Gossypium species may offer an enhanced understanding of complex genetics and novel players related to fiber quality traits. Assessment of individual fibers providing classified fiber quality information to the textile industry is Advanced Fiber Information System (AFIS) in the recent technological era. Keeping the scenario, a diverse collection of 215 Asiatic cotton accessions were evaluated across three agro-ecological zones of China.

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Salinity is a critical abiotic factor that significantly reduces agricultural production. Cotton is an important fiber crop and a pioneer on saline soil, hence genetic architecture that underpins salt tolerance should be thoroughly investigated. The Raf-like kinase B-subfamily (RAF) genes were discovered to regulate the salt stress response in cotton plants.

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Background: Cotton is an important cash crop. The fiber length has always been a hot spot, but multi-factor control of fiber quality makes it complex to understand its genetic basis. Previous reports suggested that OsGASR9 promotes germination, width, and thickness by GAs in rice, while the overexpression of AtGASA10 leads to reduced silique length, which is likely to reduce cell wall expansion.

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Upland cotton (Gossypium hirsutum L.) is an important economic crop for renewable textile fibers. However, the simultaneous improvement of yield and fiber quality in cotton is difficult as the linkage drag.

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