Identification of selective sweep and associated QTL traits in Iranian and populations.

Introduction: Identifying genomic regions under selection is the most challenging issue for improving important traits in animals. Few studies have focused on identifying genomic regions under selection in sheep. The aim of this study was to identify selective sweeps and to explore the relationship between these and quantitative trait loci (QTL) in both domestic and wild sheep species using single nucleotide polymorphism markers (SNPs).

Effect of micronization and meal size of corn grain on glycemic response and in vitro hindgut acidosis potential in horses.

This study aimed to 1) evaluate the interaction of corn grain micronization and starch levels per meal on equine plasma glucose, and 2) determine if micronization affects the risk of hindgut acidosis. Six mature (aged 6 to 10 years), healthy, non-pregnant mares (initial body weight [BW]: 301 to 463 kg) were used in a 2×3 factorial cross-over design. The treatments included two forms of corn grain (ground and micronized flaked) at three levels of starch (1, 1.

Identification of selection signatures in Capra hircus and Capra aegagrus in Iran.

Identification of selection signatures may provide a better understanding of domestication process and candidate genes contributing to this process. In this study, two populations of domestic and wild goats from Iran were analyzed to identify selection signatures. RSB, iHS, and XP-EHH statistics were used in order to identify robust selection signatures in the goat genome.

Differential Expression of RNAseq Imprinted Genes from Bovine Females Before and After Puberty.

The productivity of beef cows depends on early reproduction traits such as puberty and has an economic impact on the efficiency of production system. Imprinted genes modulate many important endocrine processes such as growth, the onset of puberty and maternal reproductive and behavior. The role of imprinted genes in puberty is a challenging subject since they show the reciprocal role of maternal and paternal genomes in progeny.

Characterization of bovine (Bos taurus) imprinted genes from genomic to amino acid attributes by data mining approaches.

Genomic imprinting results in monoallelic expression of genes in mammals and flowering plants. Understanding the function of imprinted genes improves our knowledge of the regulatory processes in the genome. In this study, we have employed classification and clustering algorithms with attribute weighting to specify the unique attributes of both imprinted (monoallelic) and biallelic expressed genes.

Assessment of maternal and parent of origin effects in genetic variation of economic traits in Iranian native fowl.

1. The objective of the study was to investigate the influence of maternal and parent of origin effects (POE) on genetic variation of Iranian native fowl on economic traits. 2.

Using quantile regression for fitting lactation curve in dairy cows.

The main objective of this study was to compare the performance of different 'nonlinear quantile regression' models evaluated at the τth quantile (0·25, 0·50, and 0·75) of milk production traits and somatic cell score (SCS) in Iranian Holstein dairy cows. Data were collected by the Animal Breeding Center of Iran from 1991 to 2011, comprising 101 051 monthly milk production traits and SCS records of 13 977 cows in 183 herds. Incomplete gamma (Wood), exponential (Wilmink), Dijkstra and polynomial (Ali & Schaeffer) functions were implemented in the quantile regression.

Attribute selection and model evaluation for the maternal and paternal imprinted genes in bovine (Bos Taurus) using supervised machine learning algorithms.

Imprinted genes display biased expression of paternal and maternal alleles in mammals. They are marked through epigenetic process during gametogenesis. Characterization of imprinted genes has expanded our understanding of the regulation and function of genes.

Preparation of fish waste silage and its effect on the growth performance and meat quality of broiler chickens.

Background: This experiment was conducted to evaluate the effects of replacing soybean meal with fish-waste silage (FWS) in diets on growth performance and meat quality in broiler chickens. Fish waste (FW) was fermented with molasses and Lactobacillus plantarum and Aspergillus oryzae for 15 days. A total of 240 day-old male Cobb 500 broiler chickens were used in a 42-day experiment in which the birds were randomly allotted to one of five dietary treatments (containing 0, 30, 60, 90, and 120 g kg FWS) in a completely randomized design.

Genetic analyses of partial egg production in Japanese quail using multi-trait random regression models.

1. The aim of the present study was to estimate genetic parameters for average egg weight (EW) and egg number (EN) at different ages in Japanese quail using multi-trait random regression (MTRR) models. 2.

Study on the chemical and microbial composition and probiotic characteristics of dominant lactic acid bacteria in fermented poultry slaughterhouse waste.

This study aimed to evaluate the quality of fermented poultry slaughterhouse waste and isolate and identify the probiotic bacteria present in it. Poultry slaughterhouse waste samples supplemented with 5% starter culture and 0.2% propionic acid received one of four experimental treatments, which consisted of further supplementation with: (1) 10% molasses (M10); (2) 15% molasses (M15); (3) 10% molasses with 200ppm butylated hydroxytoluene (MB10); and (4) 15% molasses with 200ppm butylated hydroxytoluene (MB15).

Fermented rapeseed meal is effective in controlling Salmonella enterica serovar Typhimurium infection and improving growth performance in broiler chicks.

The aim of present experiment was to assess the effects of fermented rapeseed meal (FRSM) on Salmonella enterica serovar Typhimurium (S. Typhimurium) colonization and growth performance in broiler chicks. Two hundred forty day-old male Cobb 500 broiler chicks were divided into six experimental treatments with four replicates and 10 birds per each.

Genetic evaluation of weekly body weight in Japanese quail using random regression models.

1. A total of 11 826 records from 2489 quails, hatched between 2012 and 2013, were used to estimate genetic parameters for BW (body weight) of Japanese quail using random regression models. Weekly BW was measured from hatch until 49 d of age.

Comparison of three boosting methods in parent-offspring trios for genotype imputation using simulation study.

Background: Genotype imputation is an important process of predicting unknown genotypes, which uses reference population with dense genotypes to predict missing genotypes for both human and animal genetic variations at a low cost. Machine learning methods specially boosting methods have been used in genetic studies to explore the underlying genetic profile of disease and build models capable of predicting missing values of a marker.

Methods: In this study strategies and factors affecting the imputation accuracy of parent-offspring trios compared from lower-density SNP panels (5 K) to high density (10 K) SNP panel using three different Boosting methods namely TotalBoost (TB), LogitBoost (LB) and AdaBoost (AB).

Cloning and Expression of Iranian Turkmen-thoroughbred Horse Follicle Stimulating Hormone in .

Background: Follicle stimulating hormone (FSH) plays an essential role in reproductive physiology and follicular development.

Objective: A new variant of the equine () gene was cloned, sequenced, and expressed in ) GS115 yeast expression system.

Materials And Methods: The full-length cDNAs of the and chains were amplified by reverse transcription polymerase chain reaction (RT-PCR) using the total RNA isolated from an Iranian Turkmen-thoroughbred horse's anterior pituitary gland.

Genetic evaluation of carcass traits in Japanese quail using ultrasonic and morphological measurements.

1. A study was conducted to evaluate the carcass composition of 1083 live birds using ultrasonic and morphological measurements and to estimate the genetic relationship between predicted and dissected carcass composition in Japanese quail. 2.

Genetic parameters for feed efficiency and body weight traits in Japanese quail.

1. The objectives of the present study were to estimate heritability and genetic correlations for feed efficiency and body weight (BW) in Japanese quail. 2.

Genetic polymorphism of the CAPN1 gene is associated with meat quality traits in Japanese quail.

1. The objective of the study was to investigate the polymorphisms in two regions of the calpain 1 (CAPN1) gene and their association with breast and thigh meat quality in Japanese quail (ultimate pH (pHu), lightness, redness, yellowness, drip loss, thawing-cooking loss, water holding capacity and shear force, SF). 2.

Genetic evaluation of meat quality traits and their correlation with growth and carcase composition in Japanese quail.

1. Estimates of heritability, genetic and phenotypic correlations of performance and meat quality traits were obtained in a population of Japanese quail using restricted maximum likelihood (REML) procedures. 2.

Genetic properties of egg quality traits and their correlations with performance traits in Japanese quail.

1. Performance traits were measured on 1908 Japanese quail and egg quality traits assessed on 1800 eggs at 10 wk of age. 2.

Effect of polymorphic variants of GH, Pit-1, and beta-LG genes on milk production of Holstein cows.

Effect of polymorphic variants of growth hormone (GH), beta-lactoglobulin (beta-LG), and Pit-1 genes on milk yield was analyzed in a Holstein herd. Genotypes of the cows for these genes were determined by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. Allele frequencies were 0.

Genetic evaluation of carcass composition and fat deposition in Japanese quail.

Current research was conducted to estimate heritability and genetic correlations for carcass composition and fat deposition in Japanese quail at 42 and 91 d of age. Studied traits were BW at 42 and 91 d of age (BW42, BW91), carcass weight and percentage, breast meat weight and percentage, thigh weight and percentage, abdominal fat weight and abdominal fat percentage (AFP), skin weight and skin percentage (SP) as a measure of subcutaneous fat, and the percentage of breast intramuscular fat (IFP). Genetic parameters were estimated by restricted maximum likelihood using ASREML software.

Heritability, genetic and phenotypic correlations of egg quality traits in Iranian native fowl.

1. The objective was to estimate heritability, genetic and phenotypic correlations for egg quality traits of Iranian native fowl at the Yazd Breeding Centre. 2.

A breeding program for balanced improvement of performance and health in broilers.

To illustrate the consequences of including health related traits in a sustainable broiler breeding program, two scenarios were simulated using the SelAction program. In the first scenario (economic), selection was only for production traits and Gait Score (GS) and Heart Failure (HF) were ignored in the breeding goal. In the second scenario (sustainable), GS and HF as well as production traits were included in the breeding goal.