Publications by authors named "Zarif T"

Immune checkpoint inhibitors can lead to 'exceptional', durable responses in a subset of persons. However, the molecular basis of exceptional response (ER) to immunotherapy in metastatic clear cell renal cell carcinoma (mccRCC) has not been well characterized. Here we analyzed pretherapy genomic and transcriptomic data in treatment-naive persons with mccRCC treated with standard-of-care immunotherapies: (1) combination of programmed cell death protein and ligand 1 (PD1/PDL1) and cytotoxic T lymphocyte-associated protein 4 inhibitors (IO/IO) or (2) combination of PD1/PDL1 and vascular endothelial growth factor (VEGF) receptor inhibitors (IO/VEGF).

View Article and Find Full Text PDF

It is well understood that cancer therapies including chemotherapy, tyrosine kinase inhibitors, immune checkpoint inhibitors, and radiation can increase the risk of cardiovascular disease in patients with cancer. This can manifest as a multitude of pathologies including left ventricular dysfunction, myocarditis, cardiomyopathy, accelerated atherosclerosis, and coronary vasospasm. Multimodal cardiac imaging plays a critical role in diagnosing such pathologies by relying on noninvasive tools including echocardiograms, cardiac magnetic resonance imaging, positron emission tomography, single-photon emission computed tomography, and coronary computed tomography angiography.

View Article and Find Full Text PDF
Article Synopsis
  • The study focuses on the effectiveness and safety of second-line treatment options (docetaxel vs. alternative ARSI) for patients aged 75 and older who have metastatic castration-resistant prostate cancer (mCRPC) after failing first-line androgen receptor signaling inhibitors (ARSIs).
  • Researchers analyzed a group of 122 elderly patients, finding no significant differences in overall survival or progression-free survival when comparing those who received docetaxel to those who received an alternative ARSI.
  • The results suggest that both treatment options are similar for elderly patients, providing useful insights despite the limitations of a small and retrospective study design.
View Article and Find Full Text PDF
Article Synopsis
  • Managing metastatic castration-resistant prostate cancer (mCRPC) in men aged 75 and older is difficult due to limited research, but common first-line treatments include abiraterone acetate plus prednisone (AA) and enzalutamide (Enza).
  • A study analyzed 337 patients aged 75+ who started AA or Enza and found no significant differences in survival rates or adverse effects between those who previously used docetaxel (D) and those who only received androgen deprivation therapy (ADT).
  • The results imply that elderly men with mCRPC can expect similar outcomes and side effect profiles from AA or Enza, irrespective of prior D treatment, though the study's retrospective nature
View Article and Find Full Text PDF
Article Synopsis
  • * Methods: Researchers analyzed data from 94 patients treated at 29 institutions, assessing various factors like type of therapy, timing of recurrence, and patient risk categories, while also monitoring treatment-related side effects.
  • * Key Findings: The study revealed an 18-month PFS rate of 45% and overall survival (OS) rate of 85%, with common treatment-related side effects including skin toxicity and fatigue; it did have limitations due to patient selection.
View Article and Find Full Text PDF
Article Synopsis
  • - Gastrointestinal cancers are diverse and share risk factors with heart diseases, posing challenges in treatment.
  • - Advances in gastrointestinal cancer therapies have improved survival rates but often lead to heart-related side effects (cardiotoxicity).
  • - Clinicians need to monitor and manage the cardiotoxic effects of commonly used treatments like chemotherapy, targeted therapies, and immunotherapy in these patients.
View Article and Find Full Text PDF

Introduction: The renin-angiotensin system (RAS) has been demonstrated to modulate cell proliferation, desmoplasia, angiogenesis and immunosuppression. We examined the association of RAS inhibitors (RASi)-namely angiotensin converting enzyme inhibitors (ACEi) and angiotensin receptor blockers (ARB)-with neoadjuvant chemotherapy (NAC) for muscle-invasive bladder cancer (MIBC) preceding radical cystectomy (RC).

Patients And Methods: We retrospectively investigated concurrent RASi use with NAC prior to RC in 302 patients with MIBC from 3 academic institutions.

View Article and Find Full Text PDF

Purpose: Histologic transformation to small cell lung cancer (SCLC) is a mechanism of treatment resistance in patients with advanced oncogene-driven lung adenocarcinoma (LUAD) that currently requires histologic review for diagnosis. Herein, we sought to develop an epigenomic cell-free DNA (cfDNA)-based approach to noninvasively detect small cell transformation in patients with EGFR mutant (EGFRm) LUAD.

Experimental Design: To characterize the epigenomic landscape of transformed (t)SCLC relative to LUAD and de novo SCLC, we performed chromatin immunoprecipitation sequencing (ChIP-seq) to profile the histone modifications H3K27ac, H3K4me3, and H3K27me3; methylated DNA immunoprecipitation sequencing (MeDIP-seq); assay for transposase-accessible chromatin sequencing; and RNA sequencing on 26 lung cancer patient-derived xenograft (PDX) tumors.

View Article and Find Full Text PDF

Renal cell carcinoma with sarcomatoid differentiation (sRCC) is associated with poor survival and a heightened response to immune checkpoint inhibitors (ICIs). Two major barriers to improving outcomes for sRCC are the limited understanding of its gene regulatory programs and the low diagnostic yield of tumor biopsies due to spatial heterogeneity. Herein, we characterized the epigenomic landscape of sRCC by profiling 107 epigenomic libraries from tissue and plasma samples from 50 patients with RCC and healthy volunteers.

View Article and Find Full Text PDF
Article Synopsis
  • The study focuses on the effectiveness of PD-1 blockade therapies (nivolumab, pembrolizumab) in treating classical Hodgkin lymphoma (cHL) in patients with HIV.
  • A total of 23 patients were treated, showing an overall response rate of 83% and a notable increase in CD4 T-cell counts during treatment.
  • The research indicates that PD-1 blockade can be safely and effectively used in HIV-associated cHL, similar to its use in the general population with cHL.
View Article and Find Full Text PDF

Saliby et al. show that a machine learning approach can accurately classify clear cell renal cell carcinoma (RCC) into distinct molecular subtypes using transcriptomic data. When applied to tumors biospecimens from the JAVELIN Renal 101 (JR101) trial, a benefit is observed with immune checkpoint inhibitor (ICI)-based therapy across all molecular subtypes.

View Article and Find Full Text PDF

Background: Primary cardiac soft tissue sarcomas (CSTS) affect young adults, with dismal outcomes.

Objectives: The aim of this study was to investigate the clinical outcomes of patients with CSTS receiving immune checkpoint inhibitors (ICIs).

Methods: A retrospective, multi-institutional cohort study was conducted among patients with CSTS between 2015 and 2022.

View Article and Find Full Text PDF
Article Synopsis
  • - Patients with paraneoplastic syndromes (PNS) are often excluded from clinical trials for immune checkpoint inhibitors (ICIs) due to potential safety risks, leading to a lack of real-world data on their efficacy and safety for these patients.
  • - A study analyzed data from 109 PNS patients with solid tumors treated with ICIs between 2015 and 2022, finding that 29% of those with pre-existing PNS experienced exacerbations shortly after starting ICI therapy, and a significant portion required immunosuppressive treatment.
  • - No significant differences in overall survival (OS) or time-to-next treatment (TTNT) were observed between patients with metastatic non-small cell lung cancer (mNSCLC) with P
View Article and Find Full Text PDF
Article Synopsis
  • COVID-19 severely impacts cancer patients, particularly those with metastatic cancer, and this study explored the relationship between cancer metastasis and COVID-19 outcomes.
  • Using data from the CCC19 registry, researchers analyzed over 10,000 cancer patients with COVID-19 to assess hospitalization rates and mortality based on the presence and site of metastasis.
  • Findings showed that patients with metastases had higher hospitalization rates (59% vs. 49%) and 30-day mortality (18% vs. 9%), with those having lung metastases experiencing the highest risk of death in that timeframe.
View Article and Find Full Text PDF
Article Synopsis
  • The study examined the outcomes of Hispanic and non-Hispanic White (NHW) patients with advanced renal cell carcinoma (RCC) receiving systemic therapy at major cancer centers, using the International Metastatic Renal Cell Carcinoma Database (IMDC).
  • Researchers found that Hispanic patients were generally younger and had fewer metastatic sites compared to NHW patients, but the overall survival (OS) and time to treatment failure (TTF) were similar for both groups.
  • The analysis suggested that treatment at specialized cancer centers may help reduce disparities in cancer outcomes between different ethnic groups.
View Article and Find Full Text PDF

Patients with brain metastases (BrM) from renal cell carcinoma and their outcomes are not well characterized owing to frequent exclusion of this population from clinical trials. We analyzed data for patients with or without BrM using the International Metastatic Renal Cell Carcinoma Database Consortium (IMDC). A total of 389/4799 patients (8.

View Article and Find Full Text PDF

Although circulating tumor DNA (ctDNA) assays are increasingly used to inform clinical decisions in cancer care, they have limited ability to identify the transcriptional programs that govern cancer phenotypes and their dynamic changes during the course of disease. To address these limitations, we developed a method for comprehensive epigenomic profiling of cancer from 1 ml of patient plasma. Using an immunoprecipitation-based approach targeting histone modifications and DNA methylation, we measured 1,268 epigenomic profiles in plasma from 433 individuals with one of 15 cancers.

View Article and Find Full Text PDF
Article Synopsis
  • The chromosomal region 9p21, which includes the tumor suppressors CDKN2A/B and the MTAP gene, is frequently deleted in cancers and is linked to lower levels of tumor-infiltrating lymphocytes (TILs) and resistance to immune therapies.
  • Recent findings indicate that the loss of MTAP, rather than CDKN2A/B, contributes to worse outcomes in immune checkpoint inhibitor (ICI) treatment due to the build-up of methylthioadenosine (MTA), which negatively affects T cell function.
  • Using MTA-depleting enzymes can reverse these negative effects, leading to increased TILs and decreased tumor growth, suggesting that these therapies could enhance the effectiveness of ICI
View Article and Find Full Text PDF

Background: Treatment options for penile squamous cell carcinoma are limited. We sought to investigate clinical outcomes and safety profiles of patients with penile squamous cell carcinoma receiving immune checkpoint inhibitors.

Methods: This retrospective study included patients with locally advanced or metastatic penile squamous cell carcinoma receiving immune checkpoint inhibitors between 2015 and 2022 across 24 centers in the United States, Europe, and Asia.

View Article and Find Full Text PDF

Background: Telomerase reverse transcriptase (TERT) gene promoter mutations have been explored, as biomarkers of improved survival for patients with cancer receiving immune checkpoint inhibitors. We sought to investigate their prevalence by race and sex across different cancer types to inform patient selection in clinical trials.

Results: In this observational study, 31 925 patients with cancer underwent next-generation sequencing of their tumors with 88% (27 970) patients self-reported being Whites, 7.

View Article and Find Full Text PDF

Purpose: Respiratory mechanics and the role of sex hormones in pregnancy are not well elucidated. We examined longitudinal and positional changes in lung mechanics in pregnancy and investigated the role of sex hormones.

Methods: A longitudinal study enrolled 135 women with obesity in early pregnancy.

View Article and Find Full Text PDF

Background: Even though cytoreductive nephrectomy (CN) was once the standard of care for patients with advanced renal cell carcinoma (RCC), its role in treatment has not been well analyzed or defined in the era of immunotherapy (IO).

Materials And Methods: This study analyzed pathological outcomes in patients with advanced or metastatic RCC who received IO prior to CN. This was a multi-institutional, retrospective study of patients with advanced or metastatic RCC.

View Article and Find Full Text PDF

Renal cell carcinoma (RCC) of variant histology comprises approximately 20% of kidney cancer diagnoses, yet the optimal therapy for these patients and the factors that impact immunotherapy response remain largely unknown. To better understand the determinants of immunotherapy response in this population, we characterized blood- and tissue-based immune markers for patients with variant histology RCC, or any RCC histology with sarcomatoid differentiation, enrolled in a phase II clinical trial of atezolizumab and bevacizumab. Baseline circulating (plasma) inflammatory cytokines were highly correlated with one another, forming an "inflammatory module" that was increased in International Metastatic RCC Database Consortium poor-risk patients and was associated with worse progression-free survival (PFS; P = 0.

View Article and Find Full Text PDF