Publications by authors named "Yv Liu"

Photoreceptor transplantation is a potential therapeutic strategy for degenerative retinal diseases. Studies on mechanisms contributing to retinal regeneration and vision repair identified cellular components transfer (CCT) as playing a role, in addition to somatic augmentation (referred to as "cell replacement" in this paper). In CCT, donor photoreceptors shuttle proteins, RNA, and mitochondria to host photoreceptors through intercellular connections.

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The transplantation of human organoid-derived retinal cells is being studied as a potentially viable strategy to treat vision loss due to retinal degeneration. Experiments in animal models have demonstrated the feasibility of organoid-derived photoreceptor transplantation in various recipient contexts. In some cases, vision repair has been shown.

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DNA methylation and mRNA expression correlations are often presented with inconsistent evidence supporting causal regulation. We hypothesized that causal regulatory methylation elements would exhibit heightened demethylation sensitivity. To investigate, we analyzed 20 whole-genomic bisulfite sequenced samples before and after demethylation and identified narrow-width (45-294 bp) elements within a short plateau, termed Methylation Mesa (MM).

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Aim: Retinal cell therapy modalities, in the category of advanced therapy medicinal products (ATMPs), are being developed to target several retinal diseases. Testing in large animal models (LAMs) is a crucial step in translating retinal ATMPs into clinical practice. However, challenges including budgetary and infrastructure constraints can hinder LAM research design and execution.

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  • This study focuses on classifying coal bursting liability (CBL) to improve safety in mining operations by establishing a comprehensive index system that includes factors like dynamic fracture duration and elastic strain energy.
  • Researchers utilized a dataset of 127 CBL measurement groups and applied machine learning techniques, specifically back propagation neural networks and support vector machines, to create twelve different predictive models.
  • The Levenberg-Marquardt back propagation neural network (LM-BPNN) emerged as the most effective model, achieving notable accuracy and validation, indicating its strong potential for enhancing coal burst prevention strategies in the industry.
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The dearomatization at the hydrophobic tail of the boscalid was carried out to construct a series of novel pyrazole-4-carboxamide derivatives containing an oxime ether fragment. By using fungicide-likeness analyses and virtual screening, 24 target compounds with theoretical strong inhibitory effects against fungal succinate dehydrogenase (SDH) were designed and synthesized. Antifungal bioassays showed that the target compound could selectively inhibit the growth of , with the EC value of 1.

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The diversity of CRISPR systems, coupled with scientific ingenuity, has led to an explosion of applications; however, to test newly described innovations in their model systems, researchers typically embark on cumbersome, one-off cloning projects to generate custom reagents that are optimized for their biological questions. Here, we leverage Golden Gate cloning to create the Fragmid toolkit, a modular set of CRISPR cassettes and delivery technologies, along with a web portal, resulting in a combinatorial platform that enables scalable vector assembly within days. We further demonstrate that multiple CRISPR technologies can be assessed in parallel in a pooled screening format using this resource, enabling the rapid optimization of both novel technologies and cellular models.

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Transplantation of photoreceptor cells and retinal pigment epithelial (RPE) cells provide a potential therapy for retinal degeneration diseases. Subretinal transplantation of therapeutic donor cells into mouse recipients is challenging due to the limited surgical space allowed by the small volume of the mouse eye. We developed a trans-scleral surgical transplantation platform with direct transpupillary vision guidance to facilitate the subretinal delivery of exogenous cells in mouse recipients.

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  • The diverse CRISPR systems have led to a surge in applications, but researchers often face challenges with complicated cloning processes for custom reagents.
  • The Fragmid toolkit utilizes Golden Gate cloning to streamline the creation of CRISPR cassettes and delivery methods, allowing for quick vector assembly via an online portal.
  • This system enables researchers to evaluate multiple CRISPR technologies simultaneously, accelerating the development and optimization of CRISPR-based solutions and enhancing their usability in various biological studies.
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Cas12a CRISPR technology, unlike Cas9, allows for facile multiplexing of guide RNAs from a single transcript, simplifying combinatorial perturbations. While Cas12a has been implemented for multiplexed knockout genetic screens, it has yet to be optimized for CRISPR activation (CRISPRa) screens in human cells. Here, we develop a new Cas12a-based transactivation domain (TAD) recruitment system using the ALFA nanobody and demonstrate simultaneous activation of up to four genes.

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  • Human retinal organoid transplantation shows promise for treating degenerative retinal diseases, but how transplanted cells survive and develop is not well understood.
  • Researchers transplanted retinal organoid cells into mice lacking photoreceptors and found that transplanted human cells, identified as astrocytes and neural precursors, migrated throughout the recipient retina unlike those in cultured organoids.
  • The study indicates that the host retina environment enhances the maturation of photoreceptors and supports the survival of atypical migratory cell types, which could have important implications for future cell-based therapies for retinal diseases.
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  • Hypomethylating agents are used in cancer treatment, but their potential to reactivate oncogenes remains unclear.
  • In a study of myelodysplastic syndrome patients, 40% and 30% showed up-regulation of a specific oncogene after treatment, which correlated with worse outcomes.
  • CRISPR-DiR technology identified a critical CpG island for oncogene expression; this highlights the need for further research into the effects of hypomethylating agents on cancer treatment.
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Purpose: Cell-based therapy development for geographic atrophy (GA) in age-related macular degeneration (AMD) is hampered by the paucity of models of localized photoreceptor and retinal pigment epithelium (RPE) degeneration. We aimed to characterize the structural and functional deficits in a laser-induced nonhuman primate model, including an analysis of the choroid.

Methods: Macular laser photocoagulation was applied in four macaques.

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  • Pseudogenes, once thought to be useless remnants of evolution, are now linked to cancer prognosis and subtypes, with only a small fraction studied in cancer so far.
  • The study reveals that pseudogenes can act as epigenetic regulators that demethylate and activate oncogenes, specifically focusing on the oncogene SALL4 and its related pseudogenes in hepatocellular carcinoma (HCC).
  • Key findings show that pseudogene 5 enhances SALL4 expression by demethylating a critical CpG region, and both are significantly increased in patients with hepatitis B virus-related HCC, suggesting a new mechanism for oncogene activation in cancer.
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  • Oncofetal protein SALL4 is important for the survival of cancer cells, but targeting it only works for patients with SALL4-positive tumors.
  • Researchers discovered that by artificially introducing SALL4 in SALL4-negative cancer cells, these cells became partially reliant on SALL4 for survival, which could be exploited for treatment.
  • Using the FDA-approved drug 5-aza-2'-deoxycytidine (DAC) to induce SALL4 expression in these cancer cells made them more sensitive to another drug, entinostat, allowing for a new therapeutic strategy for previously untreatable patients.
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  • The study aims to improve cone photoreceptor transplantation for macular diseases by creating a donor mouse model with a cone-rich retina featuring a cone-specific EGFP reporter.
  • The researchers developed OPN1LW-EGFP/NRL mice and characterized their retinas using imaging techniques; they also measured the retinal function through electroretinography (ERG).
  • Results indicated that the OPN1LW-EGFP/NRL retinas had improved cone photoreceptor expression, with greater survival rates in retinal sheet grafts compared to cell suspensions three months after transplantation.
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Purpose: Short-term improvements in retinal anatomy are known to occur in preclinical models of photoreceptor transplantation. However, correlative changes over the long term are poorly understood. We aimed to develop a quantifiable imaging biomarker grading scheme, using noninvasive multimodal confocal scanning laser ophthalmoscopy (cSLO) imaging, to enable serial evaluation of photoreceptor transplantation over the long term.

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Anti-aging protein Klotho is closely associated with a variety of chronic diseases and age-related diseases. And Klotho gene deficiency enhances the phosphorylation of mammalian target of rapamycin (mTOR), resulting in exacerbating streptozotocin-stimulated diabetic glomerular injury and promoting the progression of early diabetic kidney disease (DKD). However, it has not yet been elucidated that the mechanism of Klotho function on the pathogenesis of diabetic glomerular injury.

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Avian influenza A (H5N1) viruses represent a growing threat for an influenza pandemic. The presence of widespread avian influenza virus infections further emphasizes the need for vaccine strategies for control of pre-pandemic H5N1 and other avian influenza subtypes. Influenza neuraminidase (NA) vaccines represent a potential strategy for improving vaccines against avian influenza H5N1 viruses.

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  • MERS-CoV, discovered in 2012, has led to over 1,800 infections and 650 deaths, with no current approved treatments or vaccines.
  • The spike (S) protein of MERS-CoV is crucial for infection and is a promising target for vaccine development since it stimulates the immune response.
  • The study shows that a recombinant MERS-CoV S nanoparticle vaccine combined with the Matrix-M1 adjuvant effectively induced strong antibody responses and protected mice from the virus.
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Gastric cancer is one of the leading causes for cancer death. There is an urgent need to develop new therapeutic approaches targeting metastatic gastric cancer. It has been reported that zerumbone has the anti-cancer effects in various malignant cells.

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In March 2013, diagnosis of the first reported case of human infection with a novel avian-origin influenza A(H7N9) virus occurred in eastern China. Most human cases have resulted in severe respiratory illness and, in some instances, death. Currently there are no licensed vaccines against H7N9 virus, which continues to cause sporadic human infections.

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Development of vaccination strategies for emerging pathogens are particularly challenging because of the sudden nature of their emergence and the long process needed for traditional vaccine development. Therefore, there is a need for development of a rapid method of vaccine development that can respond to emerging pathogens in a short time frame. The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2003 and Middle East Respiratory Syndrome Coronavirus (MERS-CoV) in late 2012 demonstrate the importance of coronaviruses as emerging pathogens.

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Objective: The aim was to evaluate the ability of liraglutide to augment weight loss and improve insulin resistance, cardiovascular disease (CVD) risk factors, and inflammation in a high-risk population for type 2 diabetes (T2DM) and CVD.

Research Design And Methods: We randomized 68 older individuals (mean age, 58±8 years) with overweight/obesity and prediabetes to this double-blind study of liraglutide 1.8 mg versus placebo for 14 weeks.

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SARS-CoV was the cause of the global pandemic in 2003 that infected over 8000 people in 8 months. Vaccines against SARS are still not available. We developed a novel method to produce high levels of a recombinant SARS virus-like particles (VLPs) vaccine containing the SARS spike (S) protein and the influenza M1 protein using the baculovirus insect cell expression system.

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