Publications by authors named "Yuxin Dong"

Supramolecular hydrogels offer a noncovalent binding platform that preserves the bioactivity of structural molecules while enhancing their stability, particularly in the context of diabetic wound repair. In this study, we developed protein-peptide-based supramolecular hydrogels by assembling β-sheet fibrillizing peptides (designated Q11) with β-tail fused recombinant proteins. The Q11 peptides have the ability to drive the gradated assembly of N- or C-terminal β-sheet structure (β-tail) fused recombinant proteins.

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Photocatalytic water splitting technology for H production represents a promising and sustainable approach to clean energy generation. In this study, a high concentration of oxygen vacancies was introduced into tungsten trioxide (WO) to create a vacancy-rich layer. This modified WO (WO) was then combined with N-doped ZnCdS through a hydrothermal synthesis, resulting in the formation of a Z-scheme heterojunction composite aimed at enhancing photocatalytic performance.

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Background And Aims: The escalating prevalence of IBD within specific age cohorts, 10-24 and 50-69 years, necessitates a refined understanding of its epidemiological patterns. Prior investigations have often been constrained by their limited scope, particularly in employing age-specific analyses and utilizing advanced statistical methods such as joinpoint regression. Our research examines these demographic segments to elucidate the epidemiological trajectory of IBD.

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  • This study examined how the non-canonical STING-PERK signaling pathway impacts acute kidney injury associated with sepsis (SA-AKI) by analyzing gene expression and protein levels in patients and using mouse and cell models.
  • Researchers found that STING and PERK expressions were elevated in SA-AKI, and inhibiting STING improved kidney function and reduced inflammation and cell death.
  • Results suggest that targeting the STING-PERK pathway could be a promising approach for treating SA-AKI, as it contributes to harmful processes like cell senescence and apoptosis.
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  • Sepsis is a serious infection that can cause multiple organ failures, particularly affecting kidney function, leading to renal injury.
  • The study tested a compound called H-151, which showed promise in improving kidney function in septic mice by reducing harmful substances and inflammation.
  • H-151 also increased the survival rates of mice with sepsis and reduced kidney cell death, suggesting it could be a potential treatment for septic kidney injury and may assist in understanding related biological pathways.
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Fusarium head blight is a devastating disease that causes severe yield loses and mycotoxin contamination in wheat grain. Additionally, balancing the trade-off between wheat production and disease resistance has proved challenging. This study aimed to expand the genetic tools of the endophyte Phomopsis liquidambaris against Fusarium graminearum.

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  • - The study examined how petroleum contaminants affect the decomposition of litter from plants grown in soil with varying levels of petroleum (0, 15, 30, and 45 g/kg).
  • - Results showed that higher petroleum levels decreased carbon and nitrogen in litter but increased lignin and total petroleum hydrocarbons (TPH), while also affecting enzyme activities related to decomposition.
  • - Litter from moderately contaminated soil (15 and 30 g/kg) decomposed slower than that from uncontaminated soil, indicating a complex relationship between petroleum contamination and litter decomposition processes.
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Laccase, a member of the copper oxidase family, has been used as a green catalyst in the environmental and biochemical industries. However, laccase nanoenzymes are limited to materials with copper as the active site, and noncopper laccase nanoenzymes have been scarcely reported. In this study, inspired by the multiple copper active sites of natural laccase and the redox Cu/Cu electron transfer pathway, a novel nitrogen/nickel single-atom nanoenzyme (N/Ni SAE) with high laccase-like activity was prepared by inducing Ni and dopamine precipitation through a controllable water/ethanol interface reaction.

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The matrix-based Rényi's entropy (MBRE) has recently been introduced as a substitute for the original Rényi's entropy that could be directly obtained from data samples, avoiding the expensive intermediate step of density estimation. Despite its remarkable success in a broad of information-related tasks, the computational cost of MBRE, however, becomes a bottleneck for large-scale applications. The challenge, when facing sequential data, is further amplified due to the requirement of large-scale eigenvalue decomposition on multiple dense kernel matrices constructed by sliding windows in the region of interest, resulting in O(mn) overall time complexity, where m and n denote the number and the size of windows, respectively.

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Knowledge graphs as external information has become one of the mainstream directions of current recommendation systems. Various knowledge-graph-representation methods have been proposed to promote the development of knowledge graphs in related fields. Knowledge-graph-embedding methods can learn entity information and complex relationships between the entities in knowledge graphs.

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In brain computer interface-based neurorehabilitation system, a large number of electrodes may increase the difficulty of signal acquisition and the time consumption of decoding algorithm for motor imagery EEG (MI-EEG). The traditional electrode optimization methods were limited by the low spatial resolution of scalp EEG. EEG source imaging (ESI) was further applied to reduce the number of electrodes, in which either the electrodes covering activated cortical areas were selected, or the reconstructed electrodes of EEGs with higher Fisher scores were retained.

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Motivation: Artificially making clinical decisions for patients with multi-morbidity has long been considered a thorny problem due to the complexity of the disease. Drug recommendations can assist doctors in automatically providing effective and safe drug combinations conducive to treatment and reducing adverse reactions. However, the existing drug recommendation works ignored two critical information.

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In this paper, we present a new donor-π bridge-acceptor type fluorescent probe, MIB, which bears two organelle-targeted groups, namely positively charged benzothiazole group for mitochondria and morpholine moiety for lysosomes. In aqueous solution, the nucleophilic addition of HSO (as SO donor) to MIB blocked its long-range π-conjugation and ICT process and resulted in significant optical signal changes (blue-shifted UV absorbance and fluorescence), which enabled colorimetric and ratiometric fluorescent detection of HSO with high selectivity and sensitivity (detection limit of 63.15 nM).

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  • - Fever of unknown origin (FUO) is defined as a body temperature exceeding 38.3°C lasting for at least 3 weeks without a clear diagnosis after a week of standard medical evaluation.
  • - Common causes of FUO include infections, blood-related diseases, autoimmune disorders, and other inflammatory conditions.
  • - The use of quantitative metagenomics next-generation sequencing (Q-mNGS) has increased in recent years to help identify rare or new pathogens, aiding in the investigation of undetermined fever causes.
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Subsampling is an important technique to tackle the computational challenges brought by big data. Many subsampling procedures fall within the framework of importance sampling, which assigns high sampling probabilities to the samples appearing to have big impacts. When the noise level is high, those sampling procedures tend to pick many outliers and thus often do not perform satisfactorily in practice.

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The study of histopathological phenotypes is vital for cancer research and medicine as it links molecular mechanisms to disease prognosis. It typically involves integration of heterogenous histopathological features in whole-slide images (WSI) to objectively characterize a histopathological phenotype. However, the large-scale implementation of phenotype characterization has been hindered by the fragmentation of histopathological features, resulting from the lack of a standardized format and a controlled vocabulary for structured and unambiguous representation of semantics in WSIs.

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Motivation: Structured semantic resources, for example, biological knowledge bases and ontologies, formally define biological concepts, entities and their semantic relationships, manifested as structured axioms and unstructured texts (e.g. textual definitions).

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Background: Whole-slide images (WSIs) as a kind of image data are rapidly growing in the digital pathology domain. With unusual high resolution, these images make them hard to be supported by conventional tools or file formats. Thus, it obstructs data sharing and automated analysis.

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Thanks to their unique optical and electric properties, 2D materials have attracted a lot of interest for optoelectronic applications. Here, the emerging 2D materials, organic-inorganic hybrid perovskites with van der Waals interlayer interaction (Ruddlesden-Popper perovskites), are synthesized and characterized. Photodetectors based on the few-layer Ruddlesden-Popper perovskite show good photoresponsivity as well as good detectivity.

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In this paper, the general formula for tightly focusing radially polarized beams (RPB) superposed with off-axis vortex arrays is derived based on Richard-Wolf vector diffraction theory. The off-axis vortex breaks the rotational symmetry of the energy flow along the axial direction and leads to the spatial redistribution of intensity within the focal plane. The dependence of the consequent focal intensity redistribution on the off-axis distance of vortices as well as the numerical aperture of the lens is theoretically studied.

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To gain the effects of N fertilizer applications on N2O emissions and local climate change in fertilized rubber (Hevea brasiliensis) plantations in the tropics, we measured N2O fluxes from fertilized (75 kg N ha(-1) yr(-1)) and unfertilized rubber plantations at Xishuangbanna in southwest China over a 2-year period. The N2O emissions from the fertilized and unfertilized plots were 4.0 and 2.

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As an important factor for improving recommendations, time information has been introduced to model users' dynamic preferences in many papers. However, the sequence of users' behaviour is rarely studied in recommender systems. Due to the users' unique behavior evolution patterns and personalized interest transitions among items, users' similarity in sequential dimension should be introduced to further distinguish users' preferences and interests.

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The effective management of validated ligand-binding assays used for PK, PD and immunogenicity assessments of biotherapeutics is vital to ensuring robust and consistent assay performance throughout the lifetime of the method. The structural integrity and functional quality of critical reagents is often linked to ligand-binding assay performance; therefore, physicochemical and biophysical characterization coupled with assessment of assay performance can enable the highest degree of reagent quality. The implementation of a systematic characterization process for monitoring critical reagent attributes, utilizing detailed analytical techniques such as LC-MS, can expedite assay troubleshooting and identify deleterious trends.

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Background: Simple biomarkers are required to identify TB in both HIV(-)TB(+) and HIV(+)TB(+) patients. Earlier studies have identified the M. tuberculosis Malate Synthase (MS) and MPT51 as immunodominant antigens in TB patients.

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