Supervised multi-frame dual-channel denoising enables long-term single-molecule FRET under extremely low photon budget.

Camera-based single-molecule techniques have emerged as crucial tools in revolutionizing the understanding of biochemical and cellular processes due to their ability to capture dynamic processes with high precision, high-throughput capabilities, and methodological maturity. However, the stringent requirement in photon number per frame and the limited number of photons emitted by each fluorophore before photobleaching pose a challenge to achieving both high temporal resolution and long observation times. In this work, we introduce MUFFLE, a supervised deep-learning denoising method that enables single-molecule FRET with up to 10-fold reduction in photon requirement per frame.

Sharing massive biomedical data at magnitudes lower bandwidth using implicit neural function.

Efficient storage and sharing of massive biomedical data would open up their wide accessibility to different institutions and disciplines. However, compressors tailored for natural photos/videos are rapidly limited for biomedical data, while emerging deep learning-based methods demand huge training data and are difficult to generalize. Here, we propose to conduct Biomedical data compRession with Implicit nEural Function (BRIEF) by representing the target data with compact neural networks, which are data specific and thus have no generalization issues.

NEATmap: a high-efficiency deep learning approach for whole mouse brain neuronal activity trace mapping.

Quantitative analysis of activated neurons in mouse brains by a specific stimulation is usually a primary step to locate the responsive neurons throughout the brain. However, it is challenging to comprehensively and consistently analyze the neuronal activity trace in whole brains of a large cohort of mice from many terabytes of volumetric imaging data. Here, we introduce NEATmap, a deep learning-based high-efficiency, high-precision and user-friendly software for whole-brain neuronal activity trace mapping by automated segmentation and quantitative analysis of immunofluorescence labeled c-Fos neurons.

HOPE: High-Order Polynomial Expansion of Black-Box Neural Networks.

Despite their remarkable performance, deep neural networks remain mostly "black boxes", suggesting inexplicability and hindering their wide applications in fields requiring making rational decisions. Here we introduce HOPE (High-order Polynomial Expansion), a method for expanding a network into a high-order Taylor polynomial on a reference input. Specifically, we derive the high-order derivative rule for composite functions and extend the rule to neural networks to obtain their high-order derivatives quickly and accurately.

Study on inverse geochemical modeling of hydrochemical characteristics and genesis of groundwater system in coal mine area - a case study of Longwanggou Coal Mine in Ordos Basin.

The exploitation of coal resources has disturbed the equilibrium of the original groundwater system, resulting in a perturbation of the deep groundwater dynamic conditions and hydrochemical properties. Exploring the formation of mine water chemistry under the conditions of deep coal seam mining in the Ordos Basin provides a theoretical basis for the identification of sources of mine water intrusion and the development and utilization of water resources. This paper takes Longwanggou Coal Mine as the research area, collects a total of 106 groups of water samples from the main water-filled aquifers, comprehensively uses Piper trilinear diagram, Gibbs diagram, ion correlation, ion ratio coefficient and mineral saturation index analysis, and carries out inverse geochemical modeling with PHREEQC software, so as to analyze the hydrochemical characteristics and causes of the main water-filled aquifers in deep-buried coal seams in the research area.

Retrieving Object Motions From Coded Shutter Snapshot in Dark Environment.

Video object detection is a widely studied topic and has made significant progress in the past decades. However, the feature extraction and calculations in existing video object detectors demand decent imaging quality and avoidance of severe motion blur. Under extremely dark scenarios, due to limited sensor sensitivity, we have to trade off signal-to-noise ratio for motion blur compensation or vice versa, and thus suffer from performance deterioration.

INFWIDE: Image and Feature Space Wiener Deconvolution Network for Non-Blind Image Deblurring in Low-Light Conditions.

Under low-light environment, handheld photography suffers from severe camera shake under long exposure settings. Although existing deblurring algorithms have shown promising performance on well-exposed blurry images, they still cannot cope with low-light snapshots. Sophisticated noise and saturation regions are two dominating challenges in practical low-light deblurring: the former violates the Gaussian or Poisson assumption widely used in most existing algorithms and thus degrades their performance badly, while the latter introduces non-linearity to the classical convolution-based blurring model and makes the deblurring task even challenging.

Study on the Evolution of Fault Permeability and the Retention of Coal (Rock) Pillar under the Mining Conditions of Thick Coal Seam in the Footwall of Large Normal Fault.

As a typical geological structure, the fault often threatens the safe mining of coal mines. In order to investigate the permeability evolution of the significant normal fault under the mining disturbance of the thick coal seam of the fault footwall and to propose a scientific and reasonable coal (rock) pillar retention plan, this paper took the YinJiaWa Fault (YJW Fa), a large normal fault, in Fucun Coal Mine, Shandong Province, China, as a research object, conducted a coupled fluid and solid simulation study on permeability evolution of the fault using COMSOL Multiphysics, based on the revealed geological data and rock mechanical parameters, and combined the theoretical calculation results to determine the width of the waterproof coal (rock) pillar. The results show that the width of the waterproof coal (rock) pillar of YJW Fa is negatively correlated with the porosity, permeability, and flow velocity of each monitoring point.

Preferential subcortical collateral projections of pedunculopontine nucleus-targeting cortical pyramidal neurons revealed by brain-wide single fiber tracing.

The pedunculopontine nucleus (PPN) is a heterogeneous midbrain structure involved in various brain functions, such as motor control, learning, reward, and sleep. Previous studies using conventional tracers have shown that the PPN receives extensive afferent inputs from various cortical areas. To examine how these cortical axons make collateral projections to other subcortical areas, we used a dual-viral injection strategy to sparsely label PPN-targeting cortical pyramidal neurons in CaMKIIα-Cre transgenic mice.

Recognition and quantitative analysis for six phthalate esters (PAEs) through functionalized ZIF-67@Ag nanowires as surface-enhanced Raman scattering substrate.

A novel surface enhanced Raman scattering (SERS) method was developed based on Ag nanowires embedded into functionalized metal-organic framework ZIF-67 (ZIF-67@Ag NWs) composite as substrate, which was applied for rapid recognition and sensitive detection of six PAEs. The Raman signals for PAEs detection were gained at ZIF-67@Ag NWs substrate mainly due to the "sharp tip effect" of rough Ag nanowires and excellent absorptive capacity of ZIF-67 to capture targeted molecules into the electromagnetic field. Different structural PAEs, including carbon chain lengths, isomers, and substituents, were evaluated for SERS performance and characteristic peaks under the optimal conditions.

Development and validation of a simultaneous method for the analysis of benzothiazoles and organic ultraviolet filters in various environmental matrices by GC-MS/MS.

The presence of benzothiazoles (BTHs) and organic ultraviolet filters (UV filters) in aquatic ecosystems has emerged as a significant environmental issue, requiring urgent and efficient determination methods. A new, rapid, and sensitive determination method using gas chromatography triple quadrupole mass spectrometer (GC-MS/MS) was developed for the simultaneous extraction and analysis of 10 commonly used BTHs and 10 organic UV filters in surface water, wastewater, sediment, and sludge. For aqueous samples, solid-phase extraction (SPE) method was employed with optimizing of SPE cartridge type, pH, and elution solvent.

Antibiotics, antibiotic resistance genes and microbial community in grouper mariculture.

Increasing use of feed and medicine in mariculture could cause negative environmental impacts such as habitat modification, microbial disease development and antibiotic resistance. Here we investigated contamination of antibiotics and antibiotic resistance genes (ARGs), and composition of microbial community in grouper mariculture systems in Hainan province, China. Results showed detection of various antibiotic residues with the dominance of fluoroquinolones and tetracyclines in the six grouper cultivation systems.

Continuous input of organic ultraviolet filters and benzothiazoles threatens the surface water and sediment of two major rivers in the Pearl River Basin.

The extensive usage of organic ultraviolet filters (UV filters) and benzothiazoles (BTs) has caused continuous and widespread pollution in the aquatic environment. This study investigated the occurrence of nine organic UV filters and eight BTs in the surface water and sediment of two major drinking water source rivers in the Pearl River Basin (PRB). The detection frequencies of six organic UV filters and seven BTs were above 50% in surface water, while eight target compounds were as high as 100%.

[Optimization of Tidal-Combined Flow Constructed Wetland System and Its Removal Effect on Antibiotic Resistance Genes].

Antibiotic resistance genes (ARGs) pose a serious threat to environmental biology and public health, along with the discharge and spread of wastewater. The advanced treatment of ARGs in wastewater therefore deserves special attention. In our previous study, we found that tidal flow constructed wetlands can effectively remove multiple ammonia from wastewater.

The fate of sulfonamides in the process of phytoremediation in hydroponics.

Phytoremediation has been proven to be an alternative in-situ treatment technique for sulfonamide polluted wastewater. However, the fate of sulfonamides in the phytoremediation process of multiple sulfonamides coexistence is unclear. Therefore, the possibility and mechanism of phytoremediation of ten sulfonamides by different wetland plants through hydroponics were investigated in this study.

Long-range GABAergic projections from the nucleus of the solitary tract.

The nucleus of the solitary tract (NTS) plays a crucial role in integrating peripheral information regarding visceral functions. Glutamate decarboxylase 2 (GAD2) inhibitory neurons are abundant in the NTS, and are known to form local and short-range projections within the NTS and nearby hindbrain areas. Here we performed whole-brain mapping of outputs from GAD2 neurons in the NTS using cell-type specific viral labeling together with ultrahigh-speed 3D imaging at 1-μm resolution.

Highly enhanced biodegradation of pharmaceutical and personal care products in a novel tidal flow constructed wetland with baffle and plants.

Research on decentralized wastewaters deserves special focus due to the potential abundance of emerging organic pollutants including pharmaceutical and personal care products (PPCPs), which might pose serious threats to the local water bodies and even to human health. Constructed wetland (CW) is a common decentralized wastewater treatment technology, with a certain ability to eliminate PPCPs. Nonetheless, PPCPs removal in common CWs is frequently challenging, besides, the removal mechanism remains elusive.

Photo transformation of 5-methylbenzotriazole and 5-chlorobenzotriazole by UV irradiation: Influences of pH, salinity, metal species and humic acid.

5-methylbenzotriazole (5-TTri) and 5-chlorobenzotriazole (CBT) are two benzotriazole derivatives widely used in various industrial and domestic applications. This paper reports on the photochemical behaviour of 5-TTri and CBT in aqueous solutions under UV radiation at 254 nm and the influences of pH, salinity, metal species and humic acid (HA) on their photo-transformation processes. The photolysis of 5-TTri and CBT under the exposure to UV light were found to follow the first-order reaction kinetic in all cases with half-lives ranging from 7.

Trace analysis of 28 antibiotics in plant tissues (root, stem, leaf and seed) by optimized QuEChERS pretreatment with UHPLC-MS/MS detection.

Phytoremediation has proven to be an effective in-situ treatment technique for antibiotic contamination. Due to the immature methods of extracting multi-antibiotics in different plant tissues, the antibiotic absorption and transportation mechanism in the phytoremediation process has yet to be resolved. Therefore, an improved Quick, Easy, Cheap, Effective, Rugged and Safe (QuEChERS) pretreatment with ultra-high-performance liquid chromatography tandem mass spectrometry (UHPLC-MS/MS) detection method for 28 antibiotics in different plant tissues (root, stem, leaf and seed) was developed in this study.

Scalable volumetric imaging for ultrahigh-speed brain mapping at synaptic resolution.

The speed of high-resolution optical imaging has been a rate-limiting factor for meso-scale mapping of brain structures and functional circuits, which is of fundamental importance for neuroscience research. Here, we describe a new microscopy method of Volumetric Imaging with Synchronized on-the-fly-scan and Readout (VISoR) for high-throughput, high-quality brain mapping. Combining synchronized scanning beam illumination and oblique imaging over cleared tissue sections in smooth motion, the VISoR system effectively eliminates motion blur to obtain undistorted images.

Platinum Nanoparticle Encapsulated Metal-Organic Frameworks for Colorimetric Measurement and Facile Removal of Mercury(II).

Pt nanoparticle (Pt NP)@UiO-66-NH composites were synthesized and encompassed the benefits of permanent porosity, high thermal and chemical stability of metal-organic frameworks (MOFs), together with the functional behavior of isolated Pt NPs. The PVP-stabilized Pt NPs with the average diameter of 2.48 nm were well dispersed and confined within the framework of UiO-66-NH.

Catalytic degradation of the soil fumigant 1,3-dichloropropene in aqueous biochar slurry.

Biochar has been explored as a cost-effective sorbent of contaminants, such as soil fumigant. However, contaminant-loaded biochar probably becomes a source of secondary air pollution. In this study, biochars developed from cow manure and rice husk at 300°C or 700°C were used to investigate the catalytic degradation of the soil fumigant 1,3-dichloropropene (1,3-D) in aqueous biochar slurry.

Lithium ion intercalation of 3-D vertical hierarchical TiO2 nanotubes on a titanium mesh for efficient photoelectrochemical water splitting.

In this communication, we report for the first time the demonstration of a lithium ion intercalation strategy to significantly enhance the photoelectrochemical water splitting performance on 3-dimensional vertical hierarchical top-porous-bottom-tubular TiO2 nanotubes on a fabricable titanium mesh.

Molecularly imprinted polymer grafted graphene for simultaneous electrochemical sensing of 4, 4-methylene diphenylamine and aniline by differential pulse voltammetry.

A sensitive and selective electrochemical sensor based on molecular imprinting polymers grafted graphene (MIPs-G) was developed for simultaneous measurement of 4, 4-methylene diphenylamine (MDA) and aniline by differential pulse voltammetry (DPV). MIPs-G was synthesized via free radical polymerization reaction using MDA and 4-vinyl pyridine as template molecule and functional monomer respectively. The obtained nanocomposites were characterized by transmission electron microscope, scanning electron microscope, Fourier transform infrared spectrometry, Raman spectroscopy and thermal gravimetric analysis.