Publications by authors named "Yun-peng Zhao"

Article Synopsis
  • - Horizontal gene transfer (HGT) significantly influences the evolution of both prokaryotic and eukaryotic genomes, particularly in seed plants, where its patterns and adaptations remain underexplored.
  • - Researchers identified 1,150 foreign genes in 522 land plant genomes, indicating at least 322 distinct gene transfers from nonplant sources and showing uneven distribution of these transfers between seedless and seed plants.
  • - The study found that HGT-acquired genes in land plants tend to adapt by gaining introns, leading to higher expression levels and variations in guanine metabolism, which demonstrates HGT's important role in land plant evolution.
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N6-methyladenosine (m6A) methylation is a vital epigenetic mechanism associated with drug addiction. However, the relationship between m6A modification and oxycodone rewarding is less well explored. Based on an open field test, the present study evaluated oxycodone rewarding using chromatin immunoprecipitation PCR, immunofluorescence, and RNA sequencing.

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Article Synopsis
  • KDM1A is identified as a key regulator for learning and memory, but its role in oxycodone-related rewards was unexplored until this study.
  • The researchers found that oxycodone decreased levels of PP1α while increasing KDM1A and altering histone modifications in the hippocampus of male mice, indicating a complex relationship.
  • Inhibition of KDM1A using specific drugs or gene silencing blocked the reward memory related to oxycodone, suggesting that KDM1A is crucial for the drug's rewarding effects by regulating PP1α expression.
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The structural characteristics of the organic matter and biomarker distributions in Shengli lignite (SL) were comprehensively studied by combining a variety of modern analytical techniques and solvent extraction/thermal dissolution. Characterization of SL with Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, solid C nuclear magnetic resonance spectroscopy and thermogravimetry showed that organic matter in SL is rich in oxygen functional groups, such as C-O, >C=O, and -COOH, and hydrogen bonds. The hydrogen bonds mainly include -OH···π, self-associated -OH, -OH···ether O, tightly bound cyclic -OH, -OH···N, -COOH dimers, and -SH···N.

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Photocatalytic degradation of pollutants is considered a promising approach for wastewater treatment, but is hampered by low efficiency and limited understanding of degradation pathways. A novel oxygen-doped porous g-CN/oxygen vacancies-rich BiOCl (OCN/OVBOC) heterostructure was prepared for photocatalytic degradation of bisphenol A (BPA). The synergistic defect and doping engineering favor the formation of strong bonded interface for S-scheme mechanism.

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Glutamate plays a crucial role in cognitive impairments after ischemic stroke. There is a scarcity of information about how glutamate-induced activation of cAMP-response element binding (CREB) signaling pathway regulates both the negative and positive regulators of synaptic plasticity. Recent studies have demonstrated the involvement of prominent epigenetic repressors, such as MeCP2 and DNMTs, in stroke.

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Multiple sclerosis (MS) is an inflammatory disease of the central nervous system (CNS) that causes demyelination, neuronal damage and white matter loss, but there is still no known cure. Exosomes are 30-200 nm-sized double-layered membrane vesicles that can easily cross the blood-brain barrier (BBB). Exosomes from umbilical cord mesenchymal stem cells(UMSCs) have been found to treat experimental autoimmune encephalomyelitis (EAE) through the action of anti-inflammatory and immunomodulatory, but its clinical translation has been hampered by their inefficacious accumulation in CNS.

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Article Synopsis
  • The Lauraceae family is important for its economic and ornamental value, with camphor tree (Cinnamomum camphora) being a key evergreen species in subtropical areas.
  • Researchers sequenced the C. camphora genome, identifying crucial genes related to cold response and defense mechanisms that contribute to its dominance in urban landscapes.
  • This study enhances understanding of how C. camphora adapts to environmental challenges and offers genomic resources to support its further application in various settings.
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Global warming is advancing the timing of spring leaf-out in temperate and boreal plants, affecting biological interactions and global biogeochemical cycles. However, spatial variation in spring phenological responsiveness to climate change within species remains poorly understood. Here, we investigated variation in the responsiveness of spring phenology to temperature (RSP; days to leaf-out at a given temperature) in 2754 Ginkgo biloba twigs of trees distributed across subtropical and temperate regions in China from 24°N to 44°N.

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Article Synopsis
  • The study explores biodiversity differences, focusing on phylogenetic diversity (PD) and phylogenetic beta diversity (PBD) among plant species distributed between eastern Asia and eastern North America, known as EA-ENA disjuncts.
  • It finds that disjuncts in eastern North America exhibit higher standardized effect size of PD compared to those in eastern Asia, despite having fewer species overall, and that this PD tends to decrease with increasing latitude.
  • Factors influencing SES-PD include climatic conditions and mean divergence time, with the research highlighting the need for further investigations into the historical patterns causing these biodiversity disparities.
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  • The study investigated how interactions between plants and fungi vary between leaves and soils across a vast mountain range in eastern China, examining 494 fungal communities associated with 55 tree species.
  • The research found that plant phylogeny (evolutionary relationships) was a key factor influencing fungal community composition, with leaves showing stronger ties to plant species than soils.
  • It revealed that fungal networks in leaves are more specialized and robust but less complex compared to those in soils, indicating that shifts in tree communities due to climate change could differently impact fungal diversity in these environments.
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Lead-free perovskite has attracted great attention in realizing high-performance optoelectronic devices due to their excellent atmospheric stability and nontoxic characteristics. Although a pronounced ion migration effect has been observed in this new class of materials, its potential in enhancing the overall device performance is yet to be fully explored. In this work, we studied the effect of ion migrations on the carrier transport behavior and found that the recoverable migration process can contribute to enhancing the on/off ratio in a lead-free CsCuI single-crystal microrod-based photodetector.

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Background: Golden leaf in autumn is a prominent feature of deciduous tree species like Ginkgo biloba L., a landscape tree widely cultivated worldwide. However, little was known about the molecular mechanisms of leaf yellowing, especially its dynamic regulatory network.

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Although more than 9100 plant plastomes have been sequenced, RNA editing sites of the whole plastome have been experimentally verified in only approximately 21 species, which seriously hampers the comprehensive evolutionary study of chloroplast RNA editing. We investigated the evolutionary pattern of chloroplast RNA editing sites in 19 species from all 13 families of gymnosperms based on a combination of genomic and transcriptomic data. We found that the chloroplast C-to-U RNA editing sites of gymnosperms shared many common characteristics with those of other land plants, but also exhibited many unique characteristics.

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Although an increasing number of species-specific databases have been constructed to facilitate the global research community, comprehensive databases remain rare with multidimensional research resources rather than genomic data solely, in particular for non-model species. Here we introduced GinkgoDB, the ecological genome database for the world-renowned living fossil, Ginkgo biloba L., a tree species with extreme longevity, exceptional resistance, global landscape application and dioecy.

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Climate warming-induced shifts in spring phenology have substantially affected the structure and function of terrestrial ecosystems and global biogeochemical cycles. Spring phenology is primarily triggered by spring temperature and is also affected by daylength and winter chilling, yet the relative importance of these cues across spatial gradients remains poorly understood. Here, we conducted a manipulative experiment with two daylength and three temperature treatments to investigate spatial differences in the response of ginkgo budburst to temperature and daylength, using twigs collected at three sites across a spatial gradient: a control site at a low latitude and low elevation on Tianmu Mountain (TM), a low latitude and high elevation site on Tianmu Mountain (TM), and a high latitude site on Jiufeng mountain (JF).

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TiO/porous glass-H as composite catalysts were synthesized hydrothermally in the presence of HO using porous glass microspheres as carriers. The photocatalytic-adsorptive desulfurization of model fuel by composite catalysts was investigated under UV irradiation. The structure and morphology of the composite catalysts were characterized scanning electron microscopy (SEM), N adsorption, X-ray diffraction (XRD) and ultraviolet-visible spectroscopy (UV-vis).

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Reproductive bud differentiation is one of the most critical events for the reproductive success of seed plants. Yet, our understanding of genetic basis remains limited for the development of the reproductive organ of gymnosperms, namely, unisexual strobilus or cone, leaving its regulatory network largely unknown for strobilus bud differentiation. In this study, we analyzed the temporal dynamic landscapes of genes, long non-coding RNAs (lncRNAs), and microRNAs (miRNAs) during the early differentiation of female strobilus buds in based on the whole transcriptome sequencing.

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Rationale: Gas chromatography/mass spectrometry (GC/MS) and high-performance liquid chromatography/time-of-flight mass spectrometry (HPLC/TOF-MS) were used to separate and reveal the molecular characteristics of organic matter in low-rank coals.

Methods: Six soluble portions (SPs) were obtained by sequential thermal dissolution (TD) of two low-rank coals in the order of cyclohexane, acetone and methanol solvents at 300°C. Organic matter with different molecular characteristics were enriched in eachTD extract, which was further separated and analyzed by GC/MS and HPLC/TOF-MS using an electrospray ionization source in positive mode to obtain a comprehensive understanding of the structural composition of coals.

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Coal tar pitch (CTP) with high carbon content and wide source of raw materials was an excellent precursor for the preparation of porous carbons (PCs). CTP was composed of polycyclic aromatic hydrocarbons (PAHs) with complex molecular size and chemical structure, the separation of CTP into several fractions with relatively narrow molecular weight by solvent extraction was of significance for CTP utilization. In this paper, CTP was treated by single-solvent extraction (carbon disulfide, acetone and ethyl acetate), and the six fractions were used as raw materials to prepare PCs as electrode material for electric double layer capacitor.

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Article Synopsis
  • Plant traits, which include various characteristics like morphology and physiology, play a crucial role in how plants interact with their environment and impact ecosystems, making them essential for research in areas like ecology, biodiversity, and environmental management.
  • The TRY database, established in 2007, has become a vital resource for global plant trait data, promoting open access and enabling researchers to identify and fill data gaps for better ecological modeling.
  • Although the TRY database provides extensive data, there are significant areas lacking consistent measurements, particularly for continuous traits that vary among individuals in their environments, presenting a major challenge that requires collaboration and coordinated efforts to address.
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A total of 119 surface soil samples (depth of 0-20 cm) were collected from a Chinese wolfberry demonstration garden in Zhongning of Ningxia, and samples were analyzed for seven heavy metals (Pb, Ni, Zn, Mn, Cu, Cr, and Cd). The single factor index, comprehensive index, and potential ecological risk were used to assess the soil heavy metal contamination with the soil background values of Ningxia as the evaluation standards. The absolute principal component scores and multivariate linear regression (APCS-MLR) model as well as geostatistic analysis were combined to identify and apportion the pollution sources of soil heavy metals.

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Dayan lignite was subjected to thermal dissolution sequentially with cyclohexane, acetone, and methanol. Each thermal dissolution extract was subjected to further separation/enrichment using column chromatography, which was sequentially eluted with petroleum ether, a mixture of ethyl acetate and petroleum ether (vol:vol = 1:1), and ethyl acetate. The three thermal dissolution extracts and nine enrichment subfractions were characterized by an Orbitrap mass spectrometry equipped with an atmospheric pressure chemical ionization ion source.

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Porous interconnected carbon nanosheets (PICNs) with high electrochemical performance were prepared by doping urea and a co-hydrothermal precursor derived from soybean stalk (SS) and nickel nitrate. The specific surface area and average pore diameter of the as-synthesized PICNs are 2226.29 m g and 1.

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