Publications by authors named "Yuki Ichinose"

Article Synopsis
  • A study examined how two biocontrol bacteria, Allorhizobium vitis VAR03-1 and Pseudomonas protegens Cab57, colonize the rhizosphere of Arabidopsis thaliana and how their growth patterns are affected by nutrient availability.
  • VAR03-1 was found to proliferate away from the roots when sucrose was added to the agar, while Cab57 only grew on the root surface and was dependent on both sucrose and organic acids.
  • Excess growth of these bacteria inhibited plant growth, indicating that specific nutrient requirements influence their habitat in the rhizosphere and that root-released nutrients may limit beneficial microbiota.
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Tailocins are headless phage tail structures that mediate interbacterial antagonism. Although the prototypical tailocins, R- and F-pyocins, in Pseudomonas aeruginosa, and other predominantly R-type tailocins have been studied, their presence in Alphaproteobacteria remains unexplored. Here, we report the first alphaproteobacterial F-type tailocin, named rhizoviticin, as a determinant of the biocontrol activity of Allorhizobium vitis VAR03-1 against crown gall.

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Eribulin is widely used to treat metastatic breast cancer (BC). Higher neutrophil-to-lymphocyte ratio (NLR) and platelet-to-lymphocyte ratio (PLR) are associated with higher mortality in several cancer types. However, the association between BC prognosis and peripheral immune status remains controversial.

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Article Synopsis
  • Collagen disorders are chronic autoimmune diseases, and their relationship with breast cancer risk is uncertain; this study focused on the outcomes of 25 women with both conditions.
  • The study reviewed patient data, revealing that most had specific types of collagen disorders, and the majority received immunosuppressive treatments.
  • Key findings showed that these patients had higher Ki-67 levels (indicating faster cancer cell growth) and lower rates of recurrence-free survival (RFS) and overall survival (OS) compared to a control group, suggesting the need for close follow-up for these patients.
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Vimentin is a stable mesenchymal immunohistochemical marker and is widely recognized as a major marker of mesenchymal tumors. The purpose of the present study was to investigate if the vimentin expression status might serve as a significant predictor of outcomes in patients with invasive breast carcinoma of no special type (IBC-NST) and to investigate, by comprehensive RNA sequencing analyses, the mechanisms involved in the heightened malignant potential of vimentin-positive IBC-NSTs. This study, conducted using the data of 855 patients with IBC-NST, clearly identified vimentin expression status as a very important independent biological parameter for accurately predicting the outcomes in patients with IBC-NST.

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pv. () causes bacterial blight on cabbage. We previously conducted a screening for reduced virulence using Tn transposon mutants and identified one of the transcriptional factors, HexR, as a potential virulence factor.

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Plants protect themselves from microorganisms by inducing pattern-triggered immunity (PTI) recognizing microbe-associated molecular patterns (MAMPs), conserved across many microbes. Although the MAMP perception mechanism and initial events during PTI have been well-characterized, knowledge of the transcriptomic changes in plants, especially monocots, is limited during the intermediate and terminal stages of PTI. Here, we report a time-series high-resolution RNA-sequencing (RNA-seq) analysis during PTI in the leaf disks of .

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Tumor budding grade is a very useful histological prognostic indicator for colorectal cancer patients. Recently, it has been also reported as a significant prognostic indicator in invasive breast carcinoma patients. Our group and others have previously reported that the presence of a fibrotic focus in the tumor is a very useful histological finding for accurately predicting the prognosis in patients with invasive carcinoma of no special type (ICNST) of the breast.

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Pseudomonas syringae pv. tabaci 6605 (Pta6605) is a foliar plant pathogen that causes wildfire disease on tobacco plants. It requires chemotaxis to enter plants and establish infection.

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Pseudomonas amygdali pv. tabaci (formerly Pseudomonas syringae pv. tabaci; Pta) is a gram-negative bacterium that causes bacterial wildfire disease in Nicotiana tabacum.

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is a necrotrophic plant pathogen with a wide host range. is a species complex consisting of thirteen anastomosis groups (AGs) defined by compatibility of hyphal fusion reaction and subgroups based on cultural morphology. The relationship between such classifications and host specificity remains elusive.

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Ralstonia syzygii subsp. indonesiensis (Rsi, former name: Ralstonia solanacearum phylotype IV) PW1001, a causal agent of potato wilt disease, induces hypersensitive response (HR) on its non-host eggplant (Solanum melongena cv. Senryo-nigou).

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Chemotaxis is crucial for Pseudomonas syringae pv. tabaci (Pta) 6605 to evoke disease in tobacco plants. Pta6605 harbors more than fifty genes for methyl-accepting chemotaxis proteins (mcp), but almost all are functionally uncharacterized.

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Breast cancer arising from fibroadenoma (FA) is rare, in which almost all reported cases are human epidermal growth factor receptor 2 (HER2)-negative. This is the first report to describe a case of HER2-positive breast cancer arising from FA that was treated with chemotherapy plus anti-HER2 therapy. In this early case, upfront surgery outcomes guided the selection of appropriate systemic therapy.

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Occult breast cancer is rare in practice. We studied the clinical outcomes of 5 occult breast cancers, including 2 with Luminal and 3 with non-Luminal subtypes, for which the primary site was not detected in the breast-by-breast MRI. The percentage of occult breast cancers that we encountered at our hospital was 0.

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Pseudomonas amygdali pv. tabaci strain 6605 is the bacterial pathogen causing tobacco wildfire disease that has been used as a model for elucidating virulence mechanisms. Here, we present the complete genome sequence of P.

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Article Synopsis
  • Granulomatous mastitis is a rare and benign breast condition linked to chronic inflammation, often with an unknown cause, hence it's called idiopathic granulomatous mastitis (IGM).
  • Diagnostic imaging techniques like ultrasound and mammography may not always distinguish between benign and malignant tumors, making biopsies necessary for accurate diagnosis.
  • The study reports on three IGM cases post-breast conserving surgery in cancer patients, emphasizing the need for tumorectomy when biopsy results are inconclusive, which may help guide future management of similar cases.
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Virulence factor regulator (Vfr) is an indispensable transcription factor in the expression of virulence in the phytopathogenic bacteria . However, the function of Vfr is not known so far. The deletion of resulted in the loss of surface swarming motility and reduced the virulence in .

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Article Synopsis
  • Pseudomonas syringae pv. tabaci 6605 (Pta6605) is a highly mobile bacterium responsible for wildfire disease in tobacco plants and contains multiple chemotaxis gene clusters.
  • Research involved creating deletion mutants of key genes cheA and cheY to assess their roles in the bacterium's movement and ability to cause disease.
  • Results revealed that mutants lacking genes from cluster II (cheA2 and cheY2) could not swarm or exhibit chemotaxis and did not cause disease symptoms, while mutations in cluster I had a less significant impact on chemotaxis and disease-causing ability.
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  • The patient had previously undergone a total mastectomy and received combined therapy, including bevacizumab and paclitaxel, followed by radiotherapy for metastases.
  • After developing severe dysphagia, an endoscopy revealed significant stenosis, which was treated with balloon dilatations, leading to improvement in her swallowing abilities; the stenosis was likely exacerbated by wound healing effects of bevacizumab in addition to radiation damage.
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  • GABA (γ-Aminobutyric acid) acts as a signaling molecule in plants, especially during stress and interactions with harmful bacteria, but its mechanisms are not fully understood.
  • Researchers identified a GABA receptor named McpG in the plant-pathogenic bacterium Pseudomonas syringae pv. tabaci 6605 (Pta6605) and created a mutant lacking this receptor to study its role in GABA chemotaxis.
  • The findings showed that while Pta6605 normally responds to GABA, the ΔmcpG mutant lost this attraction and was less effective in causing disease in tobacco plants, indicating that GABA sensing is crucial for the bacterium's interaction with its host.
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  • Ralstonia solanacearum injects type III effectors into host cells to cause bacterial wilt, targeting Solanaceae plants like tobacco (Nicotiana benthamiana).
  • Researchers tested 11 effectors from R. solanacearum RS1000 and identified 4 that inhibited a hypersensitive response (HR) triggered by the avirulence effector RipAA.
  • The effector RipAC was found to disrupt the interaction between host proteins NbSGT1 and NbRAR1, hampering the plant's immune response and allowing the bacteria to survive and grow better.
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Rhizoctonia solani is a necrotrophic phytopathogen belonging to basidiomycetes. It causes rice sheath blight which inflicts serious damage in rice production. The infection strategy of this pathogen remains unclear.

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pv. 6605 has two multidrug resistance (MDR) efflux pump transporters, MexAB-OprM and MexEF-OprN. To understand the role of these MDR efflux pumps in virulence, we generated deletion mutants, ∆, ∆, and ∆∆, and investigated their sensitivity to plant-derived antimicrobial compounds, antibiotics, and virulence.

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